BAC Information

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BAC

Clone NameMSMg01-202K23
Chromosome17 (Build37)
Map Location 47,268,407 - 47,268,760
singlet/doubletsinglet
Overlap genenone
Upstream gene1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110
Downstream geneTrerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202K23.T7 (MSMg01no202_k23.b1)MSMg01-202K23.TJ (MSMg01no202_k23.g1)
ACCAG387747AG387748
length700748
length of high quality
(start - end)
401 (127 - 527)279 (76 - 354)
definitionCHROMAT_FILE: MSMg01no202_k23.b1 PHD_FILE: MSMg01no202_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:35 2005CHROMAT_FILE: MSMg01no202_k23.g1 PHD_FILE: MSMg01no202_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAACACCCTCTTCTGGTCTCCATAGGCTCCTGCACATGCAGAATGCA
TATAAACTTACATATACTCTGGCACATGCTTATAAAACAATAAGTAAAGG
GGCTGGAGAGATGGCTCAGCAGTTAAGAGCACTGACTTCTCTTTCAGAGG
TCCTGAGTACAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAA
TGGGATCTGATGTCCTCTTCTGGTGTATCTGAAGACAGCTACAGTGTACT
CATATGCATACAATAAATAATTCTTTAAAAAAACAATAAATAAAATCTAA
AAAATATAAGTAAATAAAAATGACTTCACAGAATTTTCAGGTTTATATTA
ATGTTACAAACTAATAGAACATGAAAGGTTTTTGTATGTGTTGGGAACAC
TGTTTGCAAAACCACACACAGTATATGTGCCTACAAGTTTTTATTGAATT
CTGTTATCTTATGGCTAATGAATTAAGAGGTATTGGTGAGGTGGAAACTT
CTGGTTTCTTTGGAAAGTAAGTTATGTCAAATGATATTTTGCTGGGCACA
CCAGGTGAAAGGATGGTTTTGTTGGAATGGGACCATGGTGAAAAAAAGGG
TTTTCCCCGGAAGATACAACACCCCCCGTTTTAAAGGGGCTTTTTTCTTT

CGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCAATTTTCCTTTTAGAATCAATTC
AAAAACCTATTCTAGGTAGGTCTTCGTTTTTTAACACTATAGGCTAACAG
TATCCATTCTAAGATACTACGTTTTCTCTGTGTAAGAATTACTGTAGTAG
GATGAGTAGAGGGCAAANATAACTAAAATATAATCCAGCTTTGAATCCAA
ACAAACTATATGTGCACCTTGANCTTTCTTTTATACCAGAGCCAATTCCC
TTATAGCTTCAGCTGACAATTTTCTTGGGCTTTTGAAATCTTCATCACCT
TGGAGNGNTTGAATTATTTTACCCACTACCACCCNNNNNNACCGGGGNNN
NNNNNCCTTAACCAATTAATGGGTTCCCCCAAAATTTTGAAAACCATTNA
AGAGTTCTCAAATTGGAACTCTCCCTGATTTGNACCTCCCTGGGGGTGGA
AAAATTTTGTTAAANNNATTTTTTATTCCCAGGAGGAGGGGGGGGGGTGG
GTTCNNNNNNNNNNCCCCAATTCTGCGGAAAATAGGTGGGGGGGGGGGGG
AGCCTAANANAAAAAGCNCCCCTTNCTCGTCCNGNNNNTGGGGGTGCGCC
CNNNCGCCGGGCGGANAANATGCACCNNNCNNNNCCNAACCTGNTNCGNN
NNNCCGCGGACGATCCATTGTACTTGTNNGTTCGATANCGNNNCAGNG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_k23.b1 MSMg01no202_k23.b1 CHROMAT_FILE:
MSMg01no202_k23.b1 PHD_FILE: MSMg01no202_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:35 2005
         (401 letters)



>mm_chr17_47267960_47268760
          Length = 801

 Score =  596 bits (308), Expect = e-174
 Identities = 337/354 (95%), Gaps = 16/354 (4%)
 Strand = Plus / Minus

                                                                       
Query: 64  tctttcagaggtcctgagtacaattcccagcaaccacatggtggctcacaaccatctgta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tctttcagaggtcctgagtacaattcccagcaaccacatggtggctcacaaccatctgta 742

                                                                       
Query: 124 atgggatctgatgtcctcttctggtgtatctgaagacagctacagtgtactcatatgcat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgggatctgatgtcctcttctggtgtatctgaagacagctacagtgtactcatatgcat 682

                                                                       
Query: 184 acaataaataattcttt-aaaaaaacaataaat-aaaatctaaaaaatataagtaaataa 241
           ||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 681 acaataaataagtctttaaaaaaaacaataaataaaaatctaaaaaatataagtaaataa 622

                                                                       
Query: 242 aa---------at--ga---cttcacagaattttcaggtttatattaatgttacaaacta 287
           ||         ||  ||   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatgacttaagattagattccttcacagaattttcaggtttatattaatgttacaaacta 562

                                                                       
Query: 288 atagaacatgaaaggtttttgtatgtgttgggaacactgtttgcaaaaccacacacagta 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atagaacatgaaaggtttttgtatgtgttgggaacactgtttgcaaaaccacacacagta 502

                                                                 
Query: 348 tatgtgcctacaagtttttattgaattctgttatcttatggctaatgaattaag 401
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatgtgcctacaagtttttattgaattctgttatcttatggctaatgaattaag 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space:   310464
Effective search space used:   310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)