CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCAAAAATAACCTCAGAGAAAAACCTATGAAATGAACATAGAGAA
TATAAACAATAGACCATCACCATGCTTACCCAGCTTAGGGACCTAATCCT
AAAACAACCAGAGTGGAGCCACCAATGGGCTGTCCTGCGTCCCACCTGCC
CACTCACTCACTGTCCCTGCCCGGGAGAACAGCTATGTAAGAATTTGTAA
AACTGTCCCAATCCTTAAGCAGTCACGGGTGTCACGAGTGGGTATGAGTG
AGGTAGGAGGTATGCACAGCTCAGTAAACAGCTGGCCTGTGTATGAGCCG
AAGCCAAAGGTAAAGGGCCCTCTTCCCCGTTTGCTGTCTATTGCTGTGGC
CAAAGGCCACCTGGAAGATGAAAGAGCTTATTTTACCTTACAGTTTCCAG
GTCTCAGGTCTATCTCAGAGGAAAGTCACAGCATGGACTCAAGGCAAAAA
CTGATGCAGAGGCCATAGAGGAGTACCTACTAGCTTGCTCCTCATGGCTT
GCTAACTTTGCTTTCTTATAGACCCCAGGACCACCTGCCCAGAGGTGGCA
CTGCCCACTGTAGGCTGAGTCCTTCAACATCAGAAAATGCTCCACAGACT
TGCCTATAGGCCAATCTTATGGAGGGATTGTCTCCACTGATGTTCCCTGT
TCCCAGATGACTTGACCTTA

TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCCCTGGAGAGACGGTGTTCTCTTGT
ATATATAACCTAGTGCCCTGGGCCTCGCCTTAGAGGCCATTGTTTACCTC
TGAGAAGGAAGATTATGGGATATTTTAAAGACATAAATGCAAGGTCTCTT
GTGGGTAGGCAGTGGCTTGAGTGTAGGTCAGCAAGCAGAGCGGTTGGCAA
CTGCGTTTAAACAACGGTGAAAGCTTCCAGCCCAGGTGTCCTCCTCATGT
GTCTTGGTGCCTCCTTAGGCCTCTGTAAACAGCCAATCGATTGAGTGTCA
GGACTGTTTTTTTAGCTGTCCTGCACACTGGGAGTATTAGATGAAGCAGA
CTTTTTATTTAGTTCCTGACAGGTAATTAAATTCTGCCTCTACATTGGTT
TGTGATCCAGCCAAGAAGCCAGGAGTAGAATTCTGAATGGCCCTAGCTAT
TTTCTGGAATATTACAACTTAATTTTGCTTCTCAAGTTGCAAGTAGAGAT
TCTGATACTGTGGAAAGTTTGACTCACGCTCAGGGCTCCAGGTTGGAGAT
TTCATTTTTCCAACCAGAGTTTGTGCTCTTTCTCAAACATGTAAAAACCC
CTCGTTCCACATTCTTTCCAGCGTGGCCAACTGTGGGAAAAACTAAAAGT
TACAGTTAAGAAAAACCCAACT

Query= MSMg01no202_n09.b1 MSMg01no202_n09.b1 CHROMAT_FILE:
MSMg01no202_n09.b1 PHD_FILE: MSMg01no202_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:48 2005
         (676 letters)



>mm_chr17_86244651_86245726
          Length = 1076

 Score = 1216 bits (629), Expect = 0.0
 Identities = 662/673 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctccaaaaataacctcagagaaaaacctatgaaatgaacatagagaatataaac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctccaaaaataacctcagagaaaaacctatgaaatgaacatagagaatataaac 263

                                                                       
Query: 64  aatagaccatcaccatgcttacccagcttagggacctaatcctaaaacaaccagagtgga 123
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aatagaccatcaggatgcttacccagcttagggacctaatcctaaaacaaccagagtgga 323

                                                                       
Query: 124 gccaccaatgggctgtcctgcgtcccacctgcccactcactcactgtccctgcccgggag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gccaccaatgggctgtcctgcgtcccacctgcccactcactcactgtccctgcccgggag 383

                                                                       
Query: 184 aacagctatgtaagaatttgtaaaactgtcccaatccttaagcagtcacgggtgtcacga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 384 aacagctatgtaagaatttgtaaaactgtcccaatccttaagcagtcacgggtgtcaaga 443

                                                                       
Query: 244 gtgggtatgagtgaggtaggaggtatgcacagctcagtaaacagctggcctgtgtatgag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtgggtatgagtgaggtaggaggtatgcacagctcagtaaacagctggcctgtgtatgag 503

                                                                       
Query: 304 ccgaagccaaaggtaaagggccctcttccccgtttgctgtctattgctgtggccaaaggc 363
           |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 504 ccgaagccaaaggtaaagggccgtcttccctgtttgctgtctattgctgtggccaaaggc 563

                                                                       
Query: 364 cacctggaagatgaaagagcttattttaccttacagtttccaggtctcaggtctatctca 423
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 564 cacctggaagatgaaagagtttattttaccttacagtttccaggtctcaggtccatctca 623

                                                                       
Query: 424 gaggaaagtcacagcatggactcaaggcaaaaactgatgcagaggccatagaggagtacc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaggaaagtcacagcatggactcaaggcaaaaactgatgcagaggccatagaggagtacc 683

                                                                       
Query: 484 tactagcttgctcctcatggcttgctaactttgctttcttatagaccccaggaccacctg 543
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tactagcttgttcctcatggcttgctaactttgctttcttatagaccccaggaccacctg 743

                                                                       
Query: 544 cccagaggtggcactgcccactgtaggctgagtccttcaacatcagaaaatgctccacag 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cccagaggtggcactgcccactgtaggctgagtccttcaacatcagaaaatgctccacag 803

                                                                       
Query: 604 acttgcctataggccaatcttatggagggattgtctccactgatgttccctgttcccaga 663
           | ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 804 aattgcctataggccaaccttatggagggattgtctccactgatgtcccctgttcccaga 863

                        
Query: 664 tgacttgacctta 676
           |||||||||||||
Sbjct: 864 tgacttgacctta 876


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no202_n09.g1 MSMg01no202_n09.g1 CHROMAT_FILE:
MSMg01no202_n09.g1 PHD_FILE: MSMg01no202_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:48 2005
         (285 letters)



>mm_chr17_86340705_86341389
          Length = 685

 Score =  543 bits (281), Expect = e-159
 Identities = 284/285 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccctggagagacggtgttctcttgtatatataacctagtgccctgggcctcgccttaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tccctggagagacggtgttctcttgtatatataacctagtgccctgggcctcgccttaga 426

                                                                       
Query: 61  ggccattgtttacctctgagaaggaagattatgggatattttaaagacataaatgcaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ggccattgtttacctctgagaaggaagattatgggatattttaaagacataaatgcaagg 366

                                                                       
Query: 121 tctcttgtgggtaggcagtggcttgagtgtaggtcagcaagcagagcggttggcaactgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tctcttgtgggtaggcagtggcttgagtgtaggtcagcaagcagagcggttggcaactgc 306

                                                                       
Query: 181 gtttaaacaacggtgaaagcttccagcccaggtgtcctcctcatgtgtcttggtgcctcc 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ctttaaacaacggtgaaagcttccagcccaggtgtcctcctcatgtgtcttggtgcctcc 246

                                                        
Query: 241 ttaggcctctgtaaacagccaatcgattgagtgtcaggactgttt 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ttaggcctctgtaaacagccaatcgattgagtgtcaggactgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)