Query= MSMg01no205_i18.b1 MSMg01no205_i18.b1 CHROMAT_FILE:
MSMg01no205_i18.b1 PHD_FILE: MSMg01no205_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:27 2005
(694 letters)
>mm_chr17_49172929_49174023
Length = 1095
Score = 1170 bits (605), Expect = 0.0
Identities = 667/691 (96%), Gaps = 7/691 (1%)
Strand = Plus / Plus
Query: 4 ggaattctacagatgtcatgtgctacaacagtcgctagccctggctgtcaattcgtcccc 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 204 ggaattctacagatgtaatgtgctacaacagtcgctagccctggctgtcaattagtcccc 263
Query: 64 acaatcaaacagcatgcatgattttaattaacaaagaaggaagaagagattcagggaagc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acaatcaaacagcatgcatgattttaattaacaaagaaggaagaagagattcagggaagc 323
Query: 124 aacgtctgggccatttcctatcaaggctgaaacatccccaggggtccagccagggtagga 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 324 aacgtctgggccatttcctatcaaggctgaaacatccccaggggtccagccaggatagga 383
Query: 184 aagaaagagaaagctgtacatcattcacttcctagagacagggctgggtagacagctctg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagaaagagaaagctgtacatcattcacttcctagagacagggctgggtagacagctctg 443
Query: 244 aggccctgaggctctggctgataggagctgggtcctggtagggtgttggggaaacagtca 303
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 444 aggccctgaggctctggctgataggagctgggtccgggtagggtgttggggaaacagtca 503
Query: 304 agtacagtgatgcccaagggcaaggtgtagaaagtaggcatatcaaggaaagatggacaa 363
|||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 504 agtacaatgatgcccaagagcaaggtgtagaaagtaggcataccaaggaaagatggacaa 563
Query: 364 gaggccttctctagaagccttgggaggtttaagctgaggttttgaaggatgtatacaagt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaggccttctctagaagccttgggaggtttaagctgaggttttgaaggatgtatacaagt 623
Query: 424 ttgcctgggttaaaacagatagtagtctatgagccgttccctctaagttttgtttgtttg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttgcctgggttaaaacagatagtagtctatgagccgttccctctaagttttgtttgtttg 683
Query: 484 tttttgttttttgttttttgtatttaattgagacagggtttctctgtttggccctggctg 543
||||| || ||||||| |||||||||| |||||||||||||| ||||| ||||||
Sbjct: 684 ttttt------tggtttttgtttttaattgaggcagggtttctctgtgtggcc-tggctg 736
Query: 544 tcctggacctcactctatagaccagaggctggccttgaactcagaaatctgcctctctct 603
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tcctggaactcactatatagaccagaggctggccttgaactcagaaatctgcctctctct 796
Query: 604 gcctcccaagtgctgggattaaaggcgtgtgacaccactgcccgggccgattccctctaa 663
||||||||||||||||||||||||| ||||| ||||||||||| |||| |||||||||||
Sbjct: 797 gcctcccaagtgctgggattaaaggtgtgtgccaccactgccctggccaattccctctaa 856
Query: 664 gtaacccagcacttatagggctcctagagtg 694
|||||||||||||||||||||||||||||||
Sbjct: 857 gtaacccagcacttatagggctcctagagtg 887
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1095
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1085
Effective search space: 742140
Effective search space used: 742140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no205_i18.g1 MSMg01no205_i18.g1 CHROMAT_FILE:
MSMg01no205_i18.g1 PHD_FILE: MSMg01no205_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:27 2005
(637 letters)
>mm_chr17_49335236_49336273
Length = 1038
Score = 1114 bits (576), Expect = 0.0
Identities = 623/641 (97%), Gaps = 7/641 (1%)
Strand = Plus / Minus
Query: 1 ttttatcttcacaacacctgcattcttgtcctttgac---aagaatctgaggctcagaga 57
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 838 ttttatcttcacaacacttgcattcttgtcctttgacggg--gaatctgaggctcagaga 781
Query: 58 accatggtcattttcccaacgctgctctcaggtagttgaagcaagctgaatttgactcta 117
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 accatggtcattttcccaa-gctgctctcaggtagttgaagcaagctgaatttgactcta 722
Query: 118 tctccaggagggtaaagatacttagtagcatctgcagagacctggaggcgggcacctgga 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tctccaggagggtaaagatacttagtagcatctgcagagacctggaggcgggcacctgga 662
Query: 178 gcctacctgagaggagctaggttggaggaaggcacgggactgggctggggctgggatgaa 237
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gcctacctgagaggagctaggctggaggaaggcacgggactgggctggggctgggatgaa 602
Query: 238 agccctggtgtttcccaccacagcacagtactccgccctcctcggttgctactcctggat 297
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 agccctggtgcttcccaccacagcacagtactccgccctcctcggttgctactcctggat 542
Query: 298 actcctgcagctttaattaaatgttgtgtagagaggcttagcgaagggaaaacagttgct 357
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 541 actcctgcagctttaattaaatgttgtgtagagaggcttagtgaaggggaaacagttgct 482
Query: 358 atttctaagtggcctcagactcctctctgttttactgctggaacgccacggcagggaatt 417
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 481 atttctaagtggcctcagactcctctctgttttactgctggaacgccacggaagggaatt 422
Query: 418 taatgatgtttgaactacttaccagtgcttctgagaacagcaggacctcc-aggccagac 476
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 421 taatgatgtttgaactacttaccagtgcttctgagaacagcaggacctccaaggccagac 362
Query: 477 ggaaaggccattagtcccaccccacactgcccttattttaccaaggagaccctaccagac 536
|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaaagcccattaaccccaccccacactgcccttattttaccaaggagaccctaccagac 302
Query: 537 ggggtttcctcacctcctgagcgcctactccagactcttctctgcttgcctgagggctgc 596
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agggtttcctcacctcctgagcgcctactccagactcttctctgcttgcctgagggctgc 242
Query: 597 tggtgcctggacctacactgacaggatgtanaagggtttgg 637
|||||||||||||||||||||||||||||| ||||||||||
Sbjct: 241 tggtgcctggacctacactgacaggatgtagaagggtttgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1038
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1028
Effective search space: 644556
Effective search space used: 644556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
