Query= MSMg01no207_i17.b1 MSMg01no207_i17.b1 CHROMAT_FILE:
MSMg01no207_i17.b1 PHD_FILE: MSMg01no207_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:30:37 2005
(442 letters)
>mm_chr17_66014759_66015601
Length = 843
Score = 621 bits (321), Expect = 0.0
Identities = 424/487 (87%), Gaps = 50/487 (10%)
Strand = Plus / Minus
Query: 5 gaattcatgggcactggagaactccgatctacattacttccgctgtgtgtaggtgtgcag 64
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct: 794 gaattcatgggcactggagaactctgacctacattacttccgctgtgtgtaggtgtgtag 735
Query: 65 aaggccgctcag-----cct------ct---cccg--------------------acat- 89
|||| |||||| ||| || |||| || |
Sbjct: 734 aaggatgctcagtctctcctacatccctgggcccggtcaccgaggtggttctggtacctc 675
Query: 90 ---------cacctccctgaatatttc-----ccccaccccacccctgctgatatttcca 135
|||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 674 ccttctgtccacctccctgaatacttcccccaccccaccccacccctgctgatatttcca 615
Query: 136 cgtgtgacagagaagctgcaagctcactgggctgaattgagatgtagccagctcagctgt 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 614 cgtgtgacagagaagctgcaagctcactgggctgaattgagatgtagccagctcagccgt 555
Query: 196 gatttggggttgggcacccatggtctcacatctcagctgttcttgtgtaagaacacacac 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gatttggggttgggcacccatggtctcacatctcagctgttcttgtgtaagaacacacac 495
Query: 256 tctctgtgctgtgtcacaccgagagactgaacttagcacaccgagctctttattacctta 315
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 494 tctctgtgctgtgtcactccgagagactgaacttagcacaccgagccctttattacctta 435
Query: 316 gagtaagccgattattatccagtggtttcaggcttttctgggttggtcacttggtaaaca 375
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 434 gagtaagccgattattatccagtggtttcaggcttttctgggttgggcacttggtaaaca 375
Query: 376 ttttctttttgaaagtgttgtgttgttg-ttttttttatatttgttttactatttattaa 434
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
Sbjct: 374 ttttctttttgaaagtgttgtgttgttgtttttttttatatttgttttaatatttattta 315
Query: 435 ttctttt 441
|||||||
Sbjct: 314 ttctttt 308
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 843
Length adjustment: 9
Effective length of query: 433
Effective length of database: 834
Effective search space: 361122
Effective search space used: 361122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no207_i17.g1 MSMg01no207_i17.g1 CHROMAT_FILE:
MSMg01no207_i17.g1 PHD_FILE: MSMg01no207_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:30:37 2005
(744 letters)
>mm_chr17_65970692_65971833
Length = 1142
Score = 1319 bits (682), Expect = 0.0
Identities = 730/748 (97%), Gaps = 6/748 (0%)
Strand = Plus / Plus
Query: 1 tagagagatggcttggtggttaagagaacttgctgtggacccaggcttggcccccagcac 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 197 tagagagatggcttggtggttaagagaacttgctgtggacccaggcttggttcccagcac 256
Query: 61 caatgtggccactcacaaccatccttaactccagtttccaggagacccaacagttttttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 caatgtggccactcacaaccatccttaactccagtttccaggagacccaacagttttttc 316
Query: 121 tggtctcgccaggcaccaggcactgggcacagacactgtacacagacatacttggagaca 180
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 317 tggtctcgccaggcaccaggcactgggcacagacgctgtatacagacatacttggagaca 376
Query: 181 aaacacacattcacataaaataaaataaataaa----aatattaaaaagaactcttaata 236
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 377 aaacacacattcacataaaataaaataaataaataaaaatattaaaaagaactcttaata 436
Query: 237 cattgctccataattattttattgatccagaggatctcggcattcgctggacagtccact 296
||||||||||||||| |||||||||||| | | |||||||||||||||||||||||||||
Sbjct: 437 cattgctccataattgttttattgatccggtgtatctcggcattcgctggacagtccact 496
Query: 297 ggcaagacccttcatcttttactggttgaattcacacaatagataacttgtgtcttatgt 356
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 497 ggcaagacccttcatcttt-actggttgaattcacacaatagataa-ttgtgtcttatgt 554
Query: 357 gcctaattagtgtgccccttttcctaaagcggcaaagagcagtgaagaagcttaagcaca 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gcctaattagtgtgccccttttcctaaagcggcaaagagcagtgaagaagcttaagcaca 614
Query: 417 cagagcacaggatgctttgatttccacaggaagacgtccagtggtgggaccactggatca 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 cagagcacaggatgctttgatttccacaggaagacgtccagtggtgggaccactggatca 674
Query: 477 aggaatccttcaatgcataattgacactctggtcatttaaaaggtcatagcaacacacac 536
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 aggaatccttcaatgcgtaattgacactctggtcatttaaaaggtcatagcaacacacac 734
Query: 537 atctggcaaaaataggtgagggtccatctctccctacatcaccaagttacatgaacatgc 596
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 735 atctggcaaaaataggcgagggtccatctctccctacatcaccaagttacatggacatgc 794
Query: 597 agaaacaaccttgagtagtttgtctgccttctaagcatttatgatttactaaatgtctgt 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 agaaacaaccttgagtagtttgtctgccttctaagcatttatgatttactaaatgtctgt 854
Query: 657 ggaatccgttcttagttcttgcttccatcttgtcctttcgctcaccccaccaactctcag 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 ggaatccgttcttagttcttgcttccatcttgtcctttcgctcaccccaccaactctcag 914
Query: 717 atgtgctgcaaagagcccctgtcgcagt 744
||| ||||||||||||||||||||||||
Sbjct: 915 atgggctgcaaagagcccctgtcgcagt 942
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 744
Length of database: 1142
Length adjustment: 10
Effective length of query: 734
Effective length of database: 1132
Effective search space: 830888
Effective search space used: 830888
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
