BAC Information

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BAC

Clone NameMSMg01-208C08
Chromosome17 (Build37)
Map Location 80,223,202 - 80,223,341
singlet/doubletsinglet
Overlap genenone
Upstream geneHeatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812, LOC383277, Cdc42ep3, LOC639964, AW061290, Cyp1b1, EG668821
Downstream geneArl6ip2, LOC625074, Hnrpll, Gpx4-ps, Galm, Sfrs7, 4930560E09Rik, Gemin6, Dhx57, Morn2, Sos1, Cdkl4, F420015M19Rik, Map4k3, LOC100043697
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-208C08.T7 (MSMg01no208_c08.b1)MSMg01-208C08.TJ (MSMg01no208_c08.g1)
ACCAG391121AG391122
length694706
length of high quality
(start - end)
279 (10 - 288)119 (58 - 176)
definitionCHROMAT_FILE: MSMg01no208_c08.b1 PHD_FILE: MSMg01no208_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:52 2005CHROMAT_FILE: MSMg01no208_c08.g1 PHD_FILE: MSMg01no208_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCCTATAGGGAGAGGATCCGCGGAATTCACTCTCGCGCACAAGGCTTG
TTTACTAGTTAGGCACAGCGGAGGCCAGCGCCATCTTATAATGGCGATTG
CTCGCGGCATTCACGGCTCTCCTCAGTGATTGCTTGTGGCACGGCTCTCC
ACGCTAGAAGAACCTCAATAAGATAAAAGGTCCTTTTTTTGGTTCTTAAA
GAGACACAAGTGCTAATCACTGGGGAAGGGGCTATGCTCAAATCAAGAGT
TTTTTTAAAAGGATTTATTTATTTTGATATTATGCGTTTGCTTTCTTACG
TGTATGCGCACCAATTACATGGCTTGCAATTGCATTGGATTCCAGAGGCA
GAAACCCTGGGGTTACAGTTGACTATGAATAGTTTTGCCCCCCCCAAAAA
ATAAAAAACAAGTGCTTTTAACTACTGATTTACATCTCTACCCCTGATAA
TCCCATTTAGCAATACACCCGATGAGGGGCGGTGAGAAAGTTATCACGAA
AAACACCAGCCTAGAAGATATTTACTCTATACGTTAAACCTATAACCCGC
CTTATGTCAAGTTATTTCTTGAAAAATCTCTTTCTAAAATCCTACATATT
TTTTTCTGTTCTACTCCTGCCTTTTCTTCCCCCTTTAGATTATTTTTGCT
ACGCCACCATCACTTTTCCATGTCTCACAAATTACATTTAATCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCACCCCCAGGAATCTACCCGAGAGAAATGAAAACATACGTCTG
CACGAAACTTGTCCACAAATGCTCAAAGCAGTGCTTGTAACATTCCCAGA
GTAGAAACATGCCAAATGTCCATCGGTGGGCGGTTGGATAAACAAAGTGC
AGTGTGTCTGCACTACAGAGCACATTGGTAGTAAAAAGAAACGAAAGAGC
CTTGTACAGTCCCCACGAGCCGTGGAAACATAACACAAAGAACCACATGG
TGTTTGATACCATATAGGAAATATGCCCAGCACAGGCAATTTTTTTTTTT
CCCCCCCCCCCCCCTGTGGTTGTTGGTATTGAAGGAAGAAAGGTCTGCCC
CCCCCTCTTGAAAAGATTAATATGGGGTTGGAATCCTAAAATTGATCAAA
GTGCGGTTGCTAAACCTCTGAATATGGTATAAAAATAATCCACTGAATTA
TGCACTTTATATAACCGTATCCTGCCCGTTTTATTTAATACCAAAGCTTT
TGCACCTCTTTCGCCCCCTTTACTTATTTCCTTCCCCCTCTCATTCTATC
TCCATTATTTCTCCTTATTTTCTTTTCCCCAGTTTATTATTCTTTCATCT
CTACTTTCACAATACCTTTTTACCCTCCCCCCTTTATATCCTATATCCCC
TCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no208_c08.b1 MSMg01no208_c08.b1 CHROMAT_FILE:
MSMg01no208_c08.b1 PHD_FILE: MSMg01no208_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:31:52 2005
         (279 letters)



>mm_chr17_80222858_80223545
          Length = 688

 Score =  192 bits (99), Expect = 3e-53
 Identities = 127/141 (90%), Gaps = 11/141 (7%)
 Strand = Plus / Plus

                                                                       
Query: 145 ctagaagaacctcaata-agataaaaggtcctttttttg-------gttcttaaagagac 196
           ||||||||||||||| | | |||||||||||||||||||       ||||||||||||||
Sbjct: 345 ctagaagaacctcaagaca-ataaaaggtcctttttttgataaaaggttcttaaagagac 403

                                                                       
Query: 197 acaagtgctaatcactggggaaggggctatgctcaaatcaagagtt--tttttaaaagga 254
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||
Sbjct: 404 acaagtgctaatcactggggaaggggctatgctcaaatcaagagttatttttttaaagga 463

                                
Query: 255 tttatttattttgatattatg 275
           |||||||||||| ||||||||
Sbjct: 464 tttatttattttaatattatg 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 688
Length adjustment: 9
Effective length of query: 270
Effective length of database: 679
Effective search space:   183330
Effective search space used:   183330
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)