BAC Information

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BAC

Clone NameMSMg01-210J23
Chromosome17 (Build37)
Map Location 71,770,781 - 71,771,095
singlet/doubletsinglet
Overlap geneSmchd1
Upstream geneDlgap1, Tgif1, LOC668724, LOC546695, LOC240156, Mylc2b, 2900073G15Rik, Myom1, Lpin2, Emilin2, LOC100043644
Downstream geneLOC100043879, Ndc80, LOC668740, Spdya, LOC623451, Wdr43, 4632412N22Rik, BC027072, Clip4, Alk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-210J23.T7 (MSMg01no210_j23.b1)MSMg01-210J23.TJ (MSMg01no210_j23.g1)
ACCAG392669AG392670
length726727
length of high quality
(start - end)		320 (46 - 365)599 (75 - 673)
definitionCHROMAT_FILE: MSMg01no210_j23.b1 PHD_FILE: MSMg01no210_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:14 2005CHROMAT_FILE: MSMg01no210_j23.g1 PHD_FILE: MSMg01no210_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:14 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTAATTAGCACCACAGCAGCCTTAATAGGATGTCAAAACTTTACT
TTGAGGTGAATGCCACCTCGGTCTCCCTTGCCACCGGCTCGCTGCCCAGG
CCGAAGAGGCTGAAGCGGCCAGTCAGGAAGCCCGAGTAGAGGTGGTAGAG
CCCCAGCAGGCAAAATATGGCCACCCCCAGTGGGGACAGGCGGATGCCCA
TGGGGGCCATGGCACGTTTGACCGGCACTAAGGCCGCTTCAGGCCCACCA
CTGAGTCATCCGCTATGAAGGCACCCACTTCCTGGTGCCCTCCCGAGCCA
TCACTGCTCAGGGAATTCTGTGCAGCCGCTGCCCCCCACGCCCCATACCC
CATGGCCCTGCCTTGCAGCACCCAGCAGCTGGACAATCGGCCTTCCGCGT
AGACCAACGGTCGGCAGTGAAGAAAGATGATTTTTACATTAATGTTTTCT
CTTGTCAAAGAATTGCTGTGGGCACATTTAATAACCATAACTAAAATAAG
CAGCTAATATTTAATTACCATTGATTATAATTGATAACAATTTTAAAAGC
TTTCTTTATTATCTGTAAAGCCTTTTGTTCTTTCCCAGTTAATTTGTGTC
TGTCAAGATAACATCTAACAAAGGTTTAAGTCACTTTAAGGCCTTAAGGT
GAGGCCTTAGCCAATTAAATCTTCTG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGATTACCGAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTCCAACCACTCTGGAAAT
CAATCTGGCAGTTCCTCAGGAAATTGGACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGTTATATATCCAGAAGATGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATGTCCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGT
GGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCT
AAACATATGAAACTCCAGAAAAATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no210_j23.b1 MSMg01no210_j23.b1 CHROMAT_FILE:
MSMg01no210_j23.b1 PHD_FILE: MSMg01no210_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:35:14 2005
         (320 letters)



>mm_chr17_71770504_71771223
          Length = 720

 Score =  516 bits (267), Expect = e-151
 Identities = 303/319 (94%), Gaps = 8/319 (2%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattcttaattagcaccacagcagccttaataggatgtcaaaactttactttgaggtgaa 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 aattcttaattagcaccacagcagccttaataggatgtcaaaactttactttgaggtgaa 533

                                                                       
Query: 66  tgccacctcggtctcccttgccaccggctcgctgcccaggccgaagaggctgaagcggcc 125
           |||| ||| || ||||||||||||| |||||||||||||||||||||||||||||    |
Sbjct: 532 tgccgccttggcctcccttgccaccagctcgctgcccaggccgaagaggctgaag----c 477

                                                                       
Query: 126 a----gtcaggaagcccgagtagaggtggtagagccccagcaggcaaaatatggccaccc 181
           |    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 476 aactggtcaggaagcccgagtagaggtggtagagccccagcaggcaaaatacggccagcc 417

                                                                       
Query: 182 ccagtggggacaggcggatgcccatgggggccatggcacgtttgaccggcactaaggccg 241
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 416 ccagcggggacaggcggatgcccatgggggccatggcacgtttgaccggcactaaggctg 357

                                                                       
Query: 242 cttcaggcccaccactgagtcatccgctatgaaggcacccacttcctggtgccctcccga 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 cttcaggcccaccactgagtcatccgctatgaaggcacccacttcctggtgccctcccga 297

                              
Query: 302 gccatcactgctcagggaa 320
           |||||||||||||||||||
Sbjct: 296 gccatcactgctcagggaa 278


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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