BAC Information

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BAC

Clone NameMSMg01-210M15
Chromosome17 (Build37)
Map Location 80,840,010 - 80,840,296
singlet/doubletsinglet
Overlap geneSos1
Upstream geneLOC639964, AW061290, Cyp1b1, EG668821, Arl6ip2, LOC625074, Hnrpll, Gpx4-ps, Galm, Sfrs7, 4930560E09Rik, Gemin6, Dhx57, Morn2
Downstream geneCdkl4, F420015M19Rik, Map4k3, LOC100043697, C230072F16Rik, LOC675572, EG668830, Tmem178, Thumpd2, LOC100043700, LOC100043704, Slc8a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-210M15.T7 (MSMg01no210_m15.b1)MSMg01-210M15.TJ (MSMg01no210_m15.g1)
ACCAG392770AG392771
length751763
length of high quality
(start - end)
249 (72 - 320)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no210_m15.b1 PHD_FILE: MSMg01no210_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:28 2005CHROMAT_FILE: MSMg01no210_m15.g1 PHD_FILE: MSMg01no210_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAATCCGCGGA
ATTCTTTGATTTATATCTTAACAATATCATTCTTTGTTTATTGTTTTTTA
TATAAATCTTTTCATGAATTTTGACCCTTTTTTTGTTTTTTTTTTGTTGT
TTTTTTTCGAGACAGGGTTTCTCTGTGTCACCCTGGCTGTCCTGTAACTC
ACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCC
TCCCAAGTGCTGGGACTACCACGCCTGGCTCTTTTTTTTTTTTTTTTTTA
AGACAGTGTTTTCTCTATGTTTTTTTTTTATCTTAGAACTCCGNANAGAC
CAGGCTGGTTTTGATCNCCTCCCAAACAAATCTGCTTNNNAAGTGNTAGN
AGGANNAAAGGNANGANCCACAGAAAAAAAAAAAAAAANNGNGGGGGGGG
GGGGNGNNNGAANAAGNNNNGNNNNNNNTGNTGATGGNNTGNNNNTTGTT
TATGGTTTTTGAGGTTGAGGTTAGTTATGATGGTGTGAATGATTGATGTT
AGTAAAATGTTTTAGTAAATGTAATATATTTTAATGGGATTAAAGGTATT
ATATTATATATTATATATAATTATTTATTTATATGGAAAAATAGATAAAA
TTTATTTTTGTTTTTTTTTTAATAATTTTTAAAATATGTTTTATATTAGT
ATAGATTTTAGTTGAAATAATTTTTGAATAATTTTATTAATTTAAATTTA
N
CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAGAGTCAGAGTCTCAGTCACCG
CAAACAAGACCTAAGCAGATGGAGCCCAGGTTGTATTTCAAGGCCTGTGG
CAAATGCTCACTTCTTCTGATAAGCGAAAAGGGTTTGAAAAAGCAAATTT
ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAACTGCAGAACACTTA
TATTCTAATGAAGTCAGAGCCTATTTCCTTTATCTTCCTACATTACCTAG
GTAACATATGTTAGGAAGCTAACTCAAAGTTAGGCAAAGCCCCTTAGATT
AATCCTATACTTCCATGTTATTTAATACCCCCCGACCACTTGATTCATTT
TAATCATATTTCGATTAACACTATAAAGTTTAATAAATATTTCCTTCTTC
AGTCCTAACTCAAGTTTTGTATCCGTTGACAAATCTCTTCCTAATGTCCC
CAACCCACAGGAAACATTACATTACTCTATTTCTTTGTCTGACACTGTTA
GGCAAATAACAGCAGAATTCTATCCTATGAATTTGTAAAGTTTAAGGCAT
TCTAAGTTTCCCAAATAAACACATATACATAAATTTACAGTTAAATTTTT
AAAGCTACAACAGATAGGAATTGAGAAAATACCTATTTTTGCTCCTCATT
ATTTAATGAGCATTTAATAAACAATTTAATTGCCAGGTATTGTGGTAGGC
CAGAATAATCCNA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no210_m15.g1 MSMg01no210_m15.g1 CHROMAT_FILE:
MSMg01no210_m15.g1 PHD_FILE: MSMg01no210_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:35:28 2005
         (290 letters)



>mm_chr17_80839810_80840499
          Length = 690

 Score =  522 bits (270), Expect = e-153
 Identities = 284/290 (97%), Gaps = 3/290 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagagtcagagtctcagtcaccgcaaacaagacctaagcagatggagcccaggttgtat 60
           ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 201 acagagtcagagtctcagtcaccacaaacaagacctaagcagatggagccgaggttgtat 260

                                                                       
Query: 61  ttcaaggcctgtggcaaatgctcacttcttctgataagcgaaaagggtttgaaaaagcaa 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcaaggcttgtggcaaatgctcacttcttctgataagcgaaaagggtttgaaaaagcaa 320

                                                                       
Query: 121 atttacaaaaaaaaaaaaaaaaaaaaaaaaaaaaggaaaactgcagaacacttatattct 180
           |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||
Sbjct: 321 atttacaaaaaaaaaaaaaaaaaaaaaaaaa---ggaaaactgcagaacacttatattct 377

                                                                       
Query: 181 aatgaagtcagagcctatttcctttatcttcctacattacctaggtaacatatgttagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aatgaagtcagagcctatttcctttatcttcctacattacctaggtaacatatgttagga 437

                                                             
Query: 241 agctaactcaaagttaggcaaagccccttagattaatcctatacttccat 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 agctaactcaaagttaggcaaagccccttagattaatcctatacttccat 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)