BAC Information

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BAC

Clone NameMSMg01-211L12
Chromosome17 (Build37)
Map Location 50,245,992 - 50,246,170
singlet/doubletsinglet
Overlap geneRftn1
Upstream gene1700008K24Rik, LOC672972, Mocs1, Daam2, Kif6, EG668470
Downstream geneEG668475, EG628747, LOC100043818, Dazl, Plcl2, EG654432, Tbc1d5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211L12.T7 (MSMg01no211_l12.b1)MSMg01-211L12.TJ (MSMg01no211_l12.g1)
ACCAG393338AG393339
length801476
length of high quality
(start - end)
179 (116 - 294)---
definitionCHROMAT_FILE: MSMg01no211_l12.b1 PHD_FILE: MSMg01no211_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:06 2005CHROMAT_FILE: MSMg01no211_l12.g1 PHD_FILE: MSMg01no211_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCCCCTTTTACTCTATTTCCCCCCCCCCAACCCCCCCTAAATNAAA
ATATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTAGCCCCCTCCTTTTAATTTATGGGCAAAACTTAG
CTAGAACAATGTCTTCTCTGCAGAAGTGTGCTTCCGGAATCAGACTGCAA
GTAAAAATATAATAAAGCCATTAATCTGAAAATCCATGGCTGGAAACATT
TTATTAGAGGCTTTATACAAGTTCAATGTTTCCCTCCAAAGTTTAGGAAC
ACTTCACAAATCAGAACCTGTCACATGTTATGCCAATTACCTCTGAAGGG
TAGACCTTCTCACCCCCACCTCCTGTCTTCTACACCCACCTTCTATCTCT
CACCTCCCGTTTTCTATCTTTTTATCTCCCCCCCCGCACCCCCACCCTCC
ATTTTTCACCCTGCTCCCAATACTCGCACTGATAAAGAAACATGATTTCA
ACTTTGAAGACAAGATGGCTTGAGTGCGTCTTTCAGTCTGTCTCGCCCAG
TTCATTGCCACCTTTGAGTTTCCGTTTACGCCTGTCCGTCCTTCCACCTT
TTCTTCCCCCCCCCTTTTCACCCCTTTTTCCCCTTTTTTTCCCCCTCCCC
CTTGTTTCACAGTCTATACAAAATTCAACGCCGTTTTTACCATCTTCGCA
TCTTTTTTTTCGCCCTTTTCCCCCGCCCATACCGCTATCCCTCCCTTTTT
CCCCATATCTTTTTCCCACCCCCACACCCCCCCCTTTTGCCTTTTGCCTT
T
TTTCGGGAAAGAAAAATTTTCCTCTTAAAAAAGGAAGAGGGGGNGCTTCC
ATGAGNNNNGNGNTCAAAGGGGGNNGNNNNNNGGNNGGGGGGGGTTTTCC
AAAGGGGGGNAGAAGGGAAGAGGGGGAGAGGGGGGGAGAAGAGAAGGGGG
GAGGGAGAGGAGGGGGGGGGGGATTAGGAGGGAGAAAGAAGAGAAGGGGA
AGGAGGGGGGGGAATTTAGAGGGGGAGGGGGAGAAGGGTTTTTGGCCGCA
AGGAGGAGGAGGGGGGGGGGGGGGAAAAAAAAAAAGGGGGGGGGGGGGCC
CNCGGCCGGGGGCGAGGNGGGGAGAGGGGGGAGGGGGGGAAAGGGGGGGG
GGGGAGGAAGAGGGGGGGAGGGGGAGGGAAGAAGAGGGGGAAGGAAAGGA
AAGGGGGAGGAAGAGAGGGGGAGGGGGGAAGGGGGAAAAAGAGGGGGGGG
GGGGGGGGGAAGGGGGGGGAGGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_l12.b1 MSMg01no211_l12.b1 CHROMAT_FILE:
MSMg01no211_l12.b1 PHD_FILE: MSMg01no211_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:06 2005
         (179 letters)



>mm_chr17_50245792_50246370
          Length = 579

 Score =  331 bits (171), Expect = 2e-95
 Identities = 177/179 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagccccctccttttaatttatgggcaaaacttagctagaacaatgtcttctctgcagaa 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tagccccctccttttaatttacgggcaaaacttagctagaacaatgtcttctctgcagaa 320

                                                                       
Query: 61  gtgtgcttccggaatcagactgcaagtaaaaatataataaagccattaatctgaaaatcc 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gtgtgcttccggaatcagacggcaagtaaaaatataataaagccattaatctgaaaatcc 260

                                                                      
Query: 121 atggctggaaacattttattagaggctttatacaagttcaatgtttccctccaaagttt 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 atggctggaaacattttattagaggctttatacaagttcaatgtttccctccaaagttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 579
Length adjustment: 8
Effective length of query: 171
Effective length of database: 571
Effective search space:    97641
Effective search space used:    97641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)