BAC Information

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BAC

Clone NameMSMg01-212C03
Chromosome17 (Build37)
Map Location 81,063,091 - 81,063,285
singlet/doubletsinglet
Overlap geneMap4k3
Upstream geneAW061290, Cyp1b1, EG668821, Arl6ip2, LOC625074, Hnrpll, Gpx4-ps, Galm, Sfrs7, 4930560E09Rik, Gemin6, Dhx57, Morn2, Sos1, Cdkl4, F420015M19Rik
Downstream geneLOC100043697, C230072F16Rik, LOC675572, EG668830, Tmem178, Thumpd2, LOC100043700, LOC100043704, Slc8a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212C03.T7 (MSMg01no212_c03.b1)MSMg01-212C03.TJ (MSMg01no212_c03.g1)
ACCAG393595AG393596
length703706
length of high quality
(start - end)
225 (128 - 352)195 (74 - 268)
definitionCHROMAT_FILE: MSMg01no212_c03.b1 PHD_FILE: MSMg01no212_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:49 2005CHROMAT_FILE: MSMg01no212_c03.g1 PHD_FILE: MSMg01no212_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACGCTTTTCCAACCTTCTCAACAGTCTGTGTTGTGGGAACACTTTA
TTACCACCGTTCCTTATCTCAAGAGATCTGAATCCACACTGGATCCTTCT
CAACAGTCTGTTTTACGGGAACCTTTATGACCGTGACCCGCAGTTCTGGT
TCCGGAATGAGGGATCTTCCTTGCGCCGGTGATGGTAACCGTCCCAGGTT
TTCTCGTCCCAGGTCTTCTCGTCCCAGGTCTTCTCGTTCTGGGTCTTCTC
GTCCCGGGTCTCAGCACCAACTCTTACCCGCGTTCTCGAGACCAGCCAGG
AAGAATACATCTACCGGAATCTTCTGCGGCAAAGCTTTATTGCTTACATC
TTTAGGAGCCACACAGCAAGAGAGCAAGAGTGCTCTATTGCTTACATCTT
TAGGAGCAAGAAGCATGAGCCAGAGCAAGAGAAAGAAAAAGAATGGCAAA
ACCCCGTCCCTTTTAAGGAGAATTATCCTCCGCCTAGGACGTATTACTCC
CTGATTGGCTGCAGCCCATCGGCTCAGTTGTCATCACGAGAAAGGCAGAA
TACATGGCGTTTAAACTGCCCCTGCATGCGTACAGATTATGCTTACTACT
TACAACACAGCTGTCTGCGCCCTCCTATTTTGGTCTATGTGACTTCGGCT
CCT
ATGAAGAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTTAAGCCTAAGAGAAAGGGGCAGCA
GCTGGTGTATGTAGAGGCAGCTTCCTCAATGAAACCACACCCAGAATTCC
CAAGTCACATGCTGATGACACTGTTACAGAATTACCATAATAGGTCACGT
GTGAAAGATTCTGTCTTCTAAGCAAGAATCACGAATCACTGCATGGCGCG
AGTCAATTTTATTGTTAGGTGCTGGAACCACTACTGTTTTTCAAAAGGGA
AATGAACAGTGTACCTGAGATAGCTTCCAAAATAAGCAACAATGTTTGGG
TGTTTGAATACCTCCTTNACATGCCCTCTTGCTGTACAACCGCAAAGTCT
TCTCCTAGGACCCAAAAAAAAAATATTGGATAGTCAATAGGTAAAATGCT
CATTTACTTTAATACACGTGCAAGTAATTATACTTACCATTACCTATGGC
ACAGCTAATGAACTTTATATCCAGCACAACCAATGCTCTTATTGGTATTA
CTTCTAACAACCATTTCAGCCCCGGCTTGATGAGCCCTGTTTCTTGGTTG
ATAACAATCACAGATGCGATTTTTGACCCCCGAGTCTGTTCTCACAAAGT
ACTTTACTGTTGTGCCAATGTCCTGCTCAGTAAAATACTCTCCTAGGTAT
GAATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_c03.g1 MSMg01no212_c03.g1 CHROMAT_FILE:
MSMg01no212_c03.g1 PHD_FILE: MSMg01no212_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:49 2005
         (195 letters)



>mm_chr17_81062891_81063485
          Length = 595

 Score =  369 bits (191), Expect = e-107
 Identities = 194/195 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttaagcctaagagaaaggggcagcagctggtgtatgtagaggcagcttcctcaatgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttaagcctaagagaaaggggcagcagctggtgtatgtagaggcagcttcctcaatgaa 260

                                                                       
Query: 61  accacacccagaattcccaagtcacatgctgatgacactgttacagaattaccataatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accacacccagaattcccaagtcacatgctgatgacactgttacagaattaccataatag 320

                                                                       
Query: 121 gtcacgtgtgaaagattctgtcttctaagcaagaatcacgaatcactgcatggcgcgagt 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 gtcacgtgtgaaagattctgtcttctaagcaagaatcaggaatcactgcatggcgcgagt 380

                          
Query: 181 caattttattgttag 195
           |||||||||||||||
Sbjct: 381 caattttattgttag 395


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)