BAC Information

Click to search

BAC

Clone NameMSMg01-214F07
Chromosome17 (Build37)
Map Location 72,118,702 - 72,271,273
singlet/doubletdoublet
Overlap geneClip4, Alk
Upstream geneDlgap1, Tgif1, LOC668724, LOC546695, LOC240156, Mylc2b, 2900073G15Rik, Myom1, Lpin2, Emilin2, LOC100043644, Smchd1, LOC100043879, Ndc80, LOC668740, Spdya, LOC623451, Wdr43, 4632412N22Rik, BC027072
Downstream geneYpel5, Lbh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214F07.T7 (MSMg01no214_f07.b1)MSMg01-214F07.TJ (MSMg01no214_f07.g1)
ACCAG395017AG395018
length732775
length of high quality
(start - end)
313 (46 - 358)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no214_f07.b1 PHD_FILE: MSMg01no214_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:37 2005CHROMAT_FILE: MSMg01no214_f07.g1 PHD_FILE: MSMg01no214_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,118,702 - 72,119,011)(72,270,991 - 72,271,273)
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACGGAGCTTTGTCTCATGAACACACCTGAAGAAGTTTCAGGCAT
TCAGAAAAGTTGCTGTGTAGGCAGGCCTGAGTGGAAATCAGGGTGATTGA
TCTCTTTGGTAACTTGACAGACACTTTGAAAGGGTTAAAGCATCCGAGCT
TCTTCCCTGTTGTGAAATGAAGGGCTTGTAGAGCTTACTAGGGTCCTTTG
CCCGTTTGGCTAAGCACTAAGTTCAGGGTCCTAATTAGTACCTGGCCCTT
TAAATCTTGTATCCCTAGCGCCAAGGCATGTCATTGTTAGGCATTGGTTG
CCTGTGGTGATTTGGCTGGCTTGCCCCACTCAAAGGGGACTCCACCAAAG
GGAAGCAAGACAAACCCTGCCATTACCACCGTGGCTTTCTGGAACTTGAA
TCTACCTAGGGCCCGAGGGAGCCCATTATGAAAACACCCGTTTCCATACA
TCCCCAACTAACACGCTAAGCAATTTGTACTCTGCTGAGGAAGGCTGGTG
AGGAACTGAGGAAATTGTGACATTGAGAAGACAGTCACATGATTCGGGTA
AGTCAGATTATAAAAGAAATGTGTCTCCTCAGACCTCCAGTGAAACTCAC
TTCTGTAAAGGCAGAGGTGGATAACCTGGACAAAGCAGAGCGCGCTGGAC
AATCTCAGACCAGTGAAAATGGGCCATCCTAA
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAACTTGAGCGTGGTGGTGGGAAG
TGAAGGGCCCTTGAAGTTCGTCCAGATTTGGAAAGTGCCAGCTACTGACA
CCTACAGGTATGTATAGTGGCAAATCAGCTCCCTTGTAGAAGCCTCAAGT
CCTACCTGTGGGGTGCATGTCCCAGGGTGCCCAGGCACACAAAGGGTTAC
AGACTCTGGCCCATTAGTGGGATATAATGACCAGGGATGGACAATGGCAA
CAGAGATGCCTTTTGCCTTCTAAGAAACTCGTTAGTGGAGACGGTAAACA
GACGAGCTATTTTTTTAATTATCCGCCCCCTACAATTAGGGTGGACATAG
AAGGCTCCTGATGGAAGCCCCCAGCTTGATTCCTTGGGGGGGGGAGGGAG
GCTGCGCCCTCTCCAATACGCTCTCTTTATTGCCTCCATTTTCCTTCTTC
TTTTGATTCTCCTCTATTCCCCTCTACTTCTTTTTCTCACCTCTTTTCTC
TTCACCCGTTGTATTTCTTTTCCATCCCACTCACAACTTACAAACTTTCT
ACTTTATGTTTTCACTTTTCGACCATCCTCCTTTTCCCTGCGCCTTCATT
TTTTTTCTTTCCTACCTCCCCATACCTTTTATTAACCCCCCCACCCTCTT
CATATTTATTTTTTTCTCTCCGCTTACTAATCTAATTTAATAGTACTTTT
TCAGCATTTCTTCTTTTCCTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_f07.b1 MSMg01no214_f07.b1 CHROMAT_FILE:
MSMg01no214_f07.b1 PHD_FILE: MSMg01no214_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:37 2005
         (313 letters)



>mm_chr17_72118499_72119211
          Length = 713

 Score =  553 bits (286), Expect = e-162
 Identities = 304/310 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccacggagctttgtctcatgaacacacctgaagaagtttcaggcattcagaaaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccacggagctttgtctcatgaacacacctgaagaagtttcaggcattcagaaaa 263

                                                                       
Query: 64  gttgctgtgtaggcaggcctgagtggaaatcagggtgattgatctctttggtaacttgac 123
           ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gttgctgtggagggaggcctgagtggaaatcagggtgattgatctctttggtaacttgac 323

                                                                       
Query: 124 agacactttgaaagggttaaagcatccgagcttcttccctgttgtgaaatgaagggcttg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agacactttgaaagggttaaagcatccgagcttcttccctgttgtgaaatgaagggcttg 383

                                                                       
Query: 184 tagagcttactagggtcctttgcccgtttggctaagcactaagttcagggtcctaattag 243
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 384 tagagcttactagggtcctttgcccgtttggctaagcactaaattcagggtcctaattag 443

                                                                       
Query: 244 tacctggccctttaaatcttgtatccctagcgccaaggcatgtcattgttaggcattggt 303
           | |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 444 tgcctggccctttaaatcttgtatccatagtgccaaggcatgtcattgttaggcattggt 503

                     
Query: 304 tgcctgtggt 313
           ||||||||||
Sbjct: 504 tgcctgtggt 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no214_f07.g1 MSMg01no214_f07.g1 CHROMAT_FILE:
MSMg01no214_f07.g1 PHD_FILE: MSMg01no214_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:37 2005
         (286 letters)



>mm_chr17_72270791_72271476
          Length = 686

 Score =  493 bits (255), Expect = e-144
 Identities = 276/283 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   caacttgagcgtggtggtgggaagtgaagggcccttgaagttcgtccagatttggaaagt 60
           ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||
Sbjct: 483 caacttgagcgtggtggtgggaagtgaagggcccttgaagggagtccagatttggaaagt 424

                                                                       
Query: 61  gccagctactgacacctacaggtatgtatagtggcaaatcagctcccttgtagaagcctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gccagctactgacacctacaggtatgtatagtggcaaatcagctcccttgtagaagcctc 364

                                                                       
Query: 121 aagtcctacctgtggggtgcatgtcccagggtgcccaggcacacaaagggttacagactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aagtcctacctgtggggtgcatgtcccagggtgcccaggcacacaaagggttacagactc 304

                                                                       
Query: 181 tggcccattagtgggatataatgaccagggatggacaatggcaacagagatgccttttgc 240
           |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 303 tggcccattagtgggatataatgaccagggatggacgatggcaacagagatgtcttttgc 244

                                                      
Query: 241 cttctaagaaactcgttagtggagacggtaaacagacgagcta 283
           |||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 243 cttcaaagaaactcattagtggagacggtaaacagacgagcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)