BAC Information

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BAC

Clone NameMSMg01-215P17
Chromosome17 (Build37)
Map Location 65,829,811 - 65,830,094
singlet/doubletsinglet
Overlap geneE130009J12Rik
Upstream geneLOC100043582, Man2a1, 4930583I09Rik, LOC100043871, LOC668655
Downstream geneLOC674701, Vapa, Txndc2, Rab31, Ppp4r1, Ralbp1, LOC100043873, LOC100043592, Twsg1, Ankrd12, 5430411C19Rik, Ndufv2, ORF19, Ddx11, LOC100043599, LOC100043875, 1110012J17Rik, LOC100043876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215P17.T7 (MSMg01no215_p17.b1)MSMg01-215P17.TJ (MSMg01no215_p17.g1)
ACCAG396034AG396035
length726685
length of high quality
(start - end)
39 (68 - 106)284 (56 - 339)
definitionCHROMAT_FILE: MSMg01no215_p17.b1 PHD_FILE: MSMg01no215_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:47 2005CHROMAT_FILE: MSMg01no215_p17.g1 PHD_FILE: MSMg01no215_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTTGCGGCGCTATACGACTCCTATATTGCGAAAACCGCGGATTCTTTT
TATTACAATTATAAAAATATTTATTTTTTATTTGTGTAAGTCTTTTCTTG
CATATTCTTGCCCCCACTACTTGGGTCCTGAGTGCTTGTGGAGGCCAGAA
GAGGGTGGCAGGCCCTTTGAAATTGGAGTGACAAGTGCCCATTAGTTACT
ATGTGGATTCTTGAAATTGAACCTGCATCCTCAAGATATATTCTCAACCA
CTGACCCATCTCTTCCACCACTTTTAAAATTTTTTAAAAATATTTTTTGA
CCATTTTTTGTGTGTGTTGCGCGCACACAGACACATTAACCTGATCATCT
TTTTGTTCTCCCTCTGACCCTCTGCCTCAAGATTCCCTCCTACCTTTCTG
TCTTCCCCCCCCACCCACTATTTTATTTATTTATATGACTACATCCTCAT
GTGAACATAAATAGCAAATCCACTTGAACACTGAAACAAATAGAATCCCT
GACACTTACTATTAACCATGATCTACCAAGAGCCCCCTACATGCACATGC
TAGCGAACCAACCATCACATCCCTCCGAATAAAACCAACAAACATACACT
GCTCAACTCAAACACTACAAACCTACCCATAACCCATAAAATAATCCACT
TCCCACAAACCAGAATAACAACAAAATCCCACCAAAAGAAAAATAACCAA
GAAACTCACAGAACTAATCATCACAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTTGCTTCATATGTTTGCATTTCTACTGAGTGTTTATTTTGTAG
CCCACACATATGCAGACTGGTGTTTCTTATATTTTTCTCTCTATACTTCT
AGAAGAATGCTTCAGTAATTAAAATTCTTACATTTAGAAAACAGATAACA
GGAAAGACTGTGCACAAAATCTGGACTTGGGACGGTGTTCACGAACCGTA
TATTACTTATTTACTTGGGCCTTAATAGTTTCACTAAATGAGGTGTCAGA
TGTTGGAGATGGGGGGTGGAGAACGTTTCTGACAATACCGCTGCTGCCAT
GGCTTTGAAGGCCAATTTAAGGAAGGCTGCTTCTTTCCCCAAGAGTCCAC
ACCACCTCATGATGATGACTTGCCACCACCTCTTCTCTTAAGATGTAAGC
AATCGGGAAGACCAAGGGTGGGAAAACCCCTCAGAGAGGATAATTCAACT
CAAGACATGATGAAAAAATCAGAGGCATTATTAATCTTCCACTGGAATAA
TGAGTAAGTCCATCCCAGAATTCCATCCCCCAGACAAGTCTACTAAAGAC
AATGAGAAAATCTCATAGAAAAAGGCCATTTCACTAACTCTACACCAATA
ACACTGGAAAGCTGAAGATCTGATAACAGAACAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_p17.g1 MSMg01no215_p17.g1 CHROMAT_FILE:
MSMg01no215_p17.g1 PHD_FILE: MSMg01no215_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:47 2005
         (284 letters)



>mm_chr17_65829611_65830294
          Length = 684

 Score =  503 bits (260), Expect = e-147
 Identities = 278/284 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttgcttcatatgtttgcatttctactgagtgtttattttgtagcccacacatatgcag 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 ttttgcttcatatgtttgcatttctactgagtgtttattttgtagctcacacatatgcag 260

                                                                       
Query: 61  actggtgtttcttatatttttctctctatacttctagaagaatgcttcagtaattaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actggtgtttcttatatttttctctctatacttctagaagaatgcttcagtaattaaaat 320

                                                                       
Query: 121 tcttacatttagaaaacagataacaggaaagactgtgcacaaaatctggacttgggacgg 180
           ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||
Sbjct: 321 tcttacatttagaaaacagataacaggaaagaccgtgcacaaaatctggactgggggcgg 380

                                                                       
Query: 181 tgttcacgaaccgtatattacttatttacttgggccttaatagtttcactaaatgaggtg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 tgttcacgaaccgtatattacttatttacttgggccttaatagtttcactaaatgaggag 440

                                                       
Query: 241 tcagatgttggagatggggggtggagaacgtttctgacaatacc 284
           ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 tcagatgttggagatggggggtggagaacttttctgacaatacc 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)