Query= MSMg01no216_m03.b1 MSMg01no216_m03.b1 CHROMAT_FILE:
MSMg01no216_m03.b1 PHD_FILE: MSMg01no216_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:53 2005
(493 letters)
>mm_chr17_43277835_43278727
Length = 893
Score = 845 bits (437), Expect = 0.0
Identities = 479/493 (97%)
Strand = Plus / Plus
Query: 1 ttctgggtcatggaaatatcattcaccattgatgaattttatttttatgttcatttttca 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctgggtcatggaaatatcattcgccattgatgaattttatttttatgttcatttttca 260
Query: 61 gctccatctctacttgttaatgtcgctgccatgttcctgtgctatggtaaatctcttgat 120
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctccatccctactccttaatgtcgctgccatgttcctgtgctatggtaaatctcttgat 320
Query: 121 ttaaaccaaaagctttccttacttcctttcagaatttcacttacgttattctctctcctc 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 ttaaaccaaaagctttccttacttcctttcagaatttcacttacgttactctctctcctc 380
Query: 181 tccctcacttacaatgaataatcttggaagaaaacatgtctgcatagaaaaggactttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccctcacttacaatgaataatcttggaagaaaacatgtctgcatagaaaaggactttct 440
Query: 241 agttagttcataatgttgttccacctatagggttgcagatccatttagctccttgggtat 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggttagttcataatgttgttccacctatagggttgcagatccatttagctccttgggtat 500
Query: 301 tttctctagctcctccattgggggccctgtgatccatccaatatctgactgtgagcttcc 360
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 501 tttctctagctcctccattgggggccctgtgatccatccaatagctgactgtgagcatcc 560
Query: 361 acttctgtgtttgctaggcccctgcgtagtctcactagagactgctatatcagggtccta 420
|||||||||||||||||||||| || |||||||||||||||| |||||||| ||||||||
Sbjct: 561 acttctgtgtttgctaggccccggcatagtctcactagagacagctatatctgggtccta 620
Query: 421 tcagcacaatcttgctagtgtatgcaatggtgtcagcgttcggaggctgattatgggatg 480
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 621 tcagcacaatcttgctagtgtatgcaatggtgtcagcgttcggaagccgattatgggatg 680
Query: 481 gatccctggatac 493
|||||||||||||
Sbjct: 681 gatccctggatac 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space: 426489
Effective search space used: 426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no216_m03.g1 MSMg01no216_m03.g1 CHROMAT_FILE:
MSMg01no216_m03.g1 PHD_FILE: MSMg01no216_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:53 2005
(309 letters)
>mm_chr17_43433532_43434239
Length = 708
Score = 538 bits (278), Expect = e-157
Identities = 302/310 (97%), Gaps = 3/310 (0%)
Strand = Plus / Minus
Query: 1 agtgcatctttctaaatctccgtagaatcccacagtcacagagctgcaccaagaagtcca 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 508 agtgcatctttctaaatctcagtagaatcccacagtcacagagctgcaccaagaagtcca 449
Query: 61 aatgacatccaaacctcaccatgtggttttggatctgctgcgtgtaggagctctgactgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aatgacatccaaacctcaccatgtggttttggatctgctgcgtgtaggagctctgactgg 389
Query: 121 atccaggcaaagctaacgggacatctccacatcaccactgcccctcagcatcagcttccc 180
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 388 atccaggcaaagctaacaggacatctccacatcaccactgcccctcagcatcagctgccc 329
Query: 181 tagccaggcagagtacagtacagtccctgtagtacgctgcggtaagagcacccccagtca 240
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 328 tagccaggcagagtacagtacagtccctgtagtatgctgcggtaagagcacccc-agtca 270
Query: 241 acaagcacttacttgctctctcacagaaattaacgctctgcctgaggcctctgagagaag 300
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 269 acaagcacttacttgctctctcacagaaattaatgctctgcctgaggcctctgagaga-g 211
Query: 301 ca-ttgcagc 309
|| |||||||
Sbjct: 210 caattgcagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 708
Length adjustment: 9
Effective length of query: 300
Effective length of database: 699
Effective search space: 209700
Effective search space used: 209700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
