BAC Information

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BAC

Clone NameMSMg01-217K05
Chromosome17 (Build37)
Map Location 83,212,047 - 83,212,379
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043707, LOC625467, LOC668836, EG433141, EG625514
Downstream geneLOC100043711, LOC100043900, AW548124, EG545226, Eml4, Cox7a2l, Kcng3, Mta3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217K05.T7 (MSMg01no217_k05.b1)MSMg01-217K05.TJ (MSMg01no217_k05.g1)
ACCAG397097
length1,2901,263
length of high quality
(start - end)
---333 (71 - 403)
definitionCHROMAT_FILE: MSMg01no217_k05.b1 PHD_FILE: MSMg01no217_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:18 2005CHROMAT_FILE: MSMg01no217_k05.g1 PHD_FILE: MSMg01no217_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCGGCATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXXCXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
ATAATGGCTAGGCCCCCCCCTATGGCTGGCGATGTTTTTGAAAGGAACAA
ATTCCCCAAGAAACGCGCGTATCGCGTATACTAATCTAGTGCTACTGTTT
CTGGGGGAAGGTGCTCAAATTGAAAATAACCCTTGTTTATTATTTTATCG
GGCGGTGGGGCGTGTCATTTCTTGTGGTACTACCCCCTTA
NNNGTTTGAGGGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAAGAGAAATGTAACCATCATATCACCAAT
ATGTTTTCATATATTACACTACAAGGCACCCAAGAGTTTAATCCACTCTA
AATTCAAAATTCACTCTAAAGAGTTCAAAACCACGGAGACAGGATTCTCC
TTCATTCAATGTGAGACTTACGACAAACAATCATTAACAGTTAAAATGTT
TTGCAAGTGTCTTACAAAAGAAACCACATACACACCAAGGAAGATAAGGG
GTATGTTCTAGGAGTTCCCATGGGGGAGAAGATCTATAGATTTATATGTT
ACTGACATAAAATCCTTTTGATAATCACAGTTGTTTTAAAATACCGGGTT
TCATTGTTTTCTGTTTATGATTAGTTCAGGATTCAAATACTAGCATTGTC
TAATATTTTTCTTCCNACGCCCCAAANAANNTNAGGGNAATGAAAAAAAA
AAGGGGAGANNGNNNNNNNGGAGNAGAAGAAANAGAANANATAGGAGGAN
ATAGGGGAAANNNGGGTNNAAAANNGGGAGAANTTTNTANANTGANATTA
ATATTAAAAANAAATAAATATATAGGTATGTGGGTAGGTAGTGAGTTAGA
TAGGTAGATAGAAAAGAGATAGGTAGATAATAGATAGATAGAAAATTAGT
NATGATTNTANTTNATTTGGTAAGTTAATAAATATTGTATTTTTATAATA
TAAATNNAATATTATTTTATAANTTTGGAATATTTTAGTGAAGTATATTT
TAGAATNAATGAGGAGAAAATGAATAATGAATTTATAAGATGGGTAAAGG
ATGTGTGTGAAAATGTTTAGTTTTTTTGGGAGGGAAGAGAAGAAAGAATT
AGTTATGGAAAGGATGTTGGTGAGGAATAAGAGTTTATTGAGAGAGAATT
AAGAAGTTTAGGTTTTGGAAGGGTTTGGTTTGGGAAAAAAAATTTATTTT
TGGATTATTAAAAGATGAAAATTTTAGGTAAAGGTTGTTTTAAATTGTAG
TTAATTTTTTATTTTTTTAATAAAAAAAAGATTTTTGTTGTTTTTGTTGT
GTGAATTNTTTTTTTATAGGTATTAATGGGTTTATATATGGTTTTTAAAT
AAAATAAAATGTTTTTATAATATTTGTTTAATAATTTATTGGATTAGTTT
GGGTATAAATTATTATTGGGGTAAATATGTATTTATTTTTATTTTTGATT
TTAATGTAGTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_k05.g1 MSMg01no217_k05.g1 CHROMAT_FILE:
MSMg01no217_k05.g1 PHD_FILE: MSMg01no217_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:18 2005
         (333 letters)



>mm_chr17_83211847_83212579
          Length = 733

 Score =  605 bits (313), Expect = e-177
 Identities = 328/333 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagagaaatgtaaccatcatatcaccaatatgttttcatatattacactacaaggcacc 60
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || 
Sbjct: 201 aaagagaaatgtaaccatcatatcaacaatatgttttcatatattacactacaaggtact 260

                                                                       
Query: 61  caagagtttaatccactctaaattcaaaattcactctaaagagttcaaaaccacggagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagagtttaatccactctaaattcaaaattcactctaaagagttcaaaaccacggagac 320

                                                                       
Query: 121 aggattctccttcattcaatgtgagacttacgacaaacaatcattaacagttaaaatgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggattctccttcattcaatgtgagacttacgacaaacaatcattaacagttaaaatgtt 380

                                                                       
Query: 181 ttgcaagtgtcttacaaaagaaaccacatacacaccaaggaagataaggggtatgttcta 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 ttgcaagtgtcttacaaaagaaaccacatacacaccaaggaagattaggggtatgttcta 440

                                                                       
Query: 241 ggagttcccatgggggagaagatctatagatttatatgttactgacataaaatccttttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagttcccatgggggagaagatctatagatttatatgttactgacataaaatccttttg 500

                                            
Query: 301 ataatcacagttgttttaaaataccgggtttca 333
           |||||||||||||||||||||||||| ||||||
Sbjct: 501 ataatcacagttgttttaaaataccgtgtttca 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)