BAC Information

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BAC

Clone NameMSMg01-218J09
Chromosome17 (Build37)
Map Location 16,318,147 - 16,318,412
singlet/doubletsinglet
Overlap genenone
Upstream geneC330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
Downstream geneLOC100041383, LOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101, Zfp97
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218J09.T7 (MSMg01no218_j09.b1)MSMg01-218J09.TJ (MSMg01no218_j09.g1)
ACCAG397702AG397703
length816730
length of high quality
(start - end)
178 (70 - 247)266 (71 - 336)
definitionCHROMAT_FILE: MSMg01no218_j09.b1 PHD_FILE: MSMg01no218_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:39 2005CHROMAT_FILE: MSMg01no218_j09.g1 PHD_FILE: MSMg01no218_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCATAGAGCATAGTTAAGAGACTTTTGAAGCTAAGATATAGCTTATTT
TCTCTGGAAAAAAGTCTAGTACCCAAGGAGCTAAAGGGGTCTATAACCCT
ATAGGTGGAACAACAATATGAACTAACCAGTACCCCCAGAGCTCGTATCT
CTAGCTGCATATGTAGCAGAAGATGGCCTAGTCAGCCATCATTGGGAAGA
GAGGCTCCCTTGGTCTTGTACACTTTATATGTCCCAGTACAGGGGAAAGA
TAGGGCCAAAAAGCGGGAGTGTTTTTTTTTGATTAGCAGCCGTCGTCCCT
ACTTACGAGATGTATTTGAATAATTTTCCCCAAACCAACACCCTTTTTTG
TTATTTTTTTCGTTGATGCCCTCCTTCCCCCCCCCCAAAAAAAAAAAAAA
TCTTAGTGGTGGGGGGGGTGTTTCCTCTCTTTTTTTTTCTTCCATCTATT
GTTCCCTTCTCTTACATTTTTTTCCCTTTACCTTTTCCTTTCTTTACCTT
TATCCCTTCTCCATTTTCGTTCCTCTTCCCCTCCTTTCCTTTTCCTTCTT
CCCCTCCTTTTTCTTCCTCTCTCTGCGCTTACTTATCATCTCTCTTCATC
TTTTTCTCATTTTCTTATTTTTTAGGCCGTCCTAATTTGTTATCCTCCTC
TTACCACTAATTTCTTTTTGTTACTCACTTCTTCTTCCTTCTCTTTTTAA
CTCTACATCATACCCACATCTTCCCTTCTACCGTTCCTTATTTCGACCGC
CACTTGTGTGTATATA
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAGACCTCTGGAAGAGCAGTCAGTGCTCTT
AACCACTGAGCCATCTCCCCACCCCCAAGCACGCAATATATTTTATGATT
GAATCAGAGACAGAGTATGAAGAGGTTATTTTGTAAATAAAGGAGAGACG
TGAACGTCTGAACAACAGTTTAATAAGTGACATAATTAGTGAAGAGGGAT
TGAATCCTCCGTACACATGTCACAATAAGACTGGCTCACTGGAGAAAGGA
AGACAGTTTTCATCATGTGTAATTTGAATACTGTAAGGTGTGCTTTACTT
CTTTTAAAGTTTGTTTCTTTCNANAACAGAGCCTGATTCTTCTATGGNTC
ATCTCTTCCCTCTTCACCGCCCACTAGAATAAAAAGCCTGTGTCGAGATC
ACATTCATCTTGGTTCCACTAATCCAGTGTGACTTGCAGATAATAGGCTT
ACAGCCACTCTTGGTTTGATAAGACTTTGATAAAGCTTCATAATACTCTC
TTGCATAGTGGGCCTCTTTTTAAAGTTCCTAGGCTTTTTTTCTTTCTTTT
TTCAGCATCTTATATTTACCTTTTGCTCTGCATGCAATTTTCCAGAAGCA
AAGAAACGGGTTTTATGTATTGAACATTACCTTCACGTACAACATTTCCT
CCCCACTTTACCAATAGGTTACCAGCCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_j09.g1 MSMg01no218_j09.g1 CHROMAT_FILE:
MSMg01no218_j09.g1 PHD_FILE: MSMg01no218_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:39 2005
         (266 letters)



>mm_chr17_16317891_16318556
          Length = 666

 Score =  499 bits (258), Expect = e-146
 Identities = 264/266 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagacctctggaagagcagtcagtgctcttaaccactgagccatctccccacccccaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 522 aagacctctggaagagcagtcagtgctcttaaccactgagccatctccccagccccaagc 463

                                                                       
Query: 61  acgcaatatattttatgattgaatcagagacagagtatgaagaggttattttgtaaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 acgcaatatattttatgattgaatcagagacagagtatgaagaggttattttgtaaataa 403

                                                                       
Query: 121 aggagagacgtgaacgtctgaacaacagtttaataagtgacataattagtgaagagggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aggagagacgtgaacgtctgaacaacagtttaataagtgacataattagtgaagagggat 343

                                                                       
Query: 181 tgaatcctccgtacacatgtcacaataagactggctcactggagaaaggaagacagtttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tgaatcctccgtacacatgtcacaataagactggctcactggagaaaggaagacagtttt 283

                                     
Query: 241 catcatgtgtaatttgaatactgtaa 266
           ||||||||| ||||||||||||||||
Sbjct: 282 catcatgtggaatttgaatactgtaa 257


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 666
Length adjustment: 9
Effective length of query: 257
Effective length of database: 657
Effective search space:   168849
Effective search space used:   168849
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)