BAC Information

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BAC

Clone NameMSMg01-231J23
Chromosome17 (Build37)
Map Location 65,753,974 - 65,754,261
singlet/doubletsinglet
Overlap geneE130009J12Rik
Upstream geneLOC100043582, Man2a1, 4930583I09Rik, LOC100043871
Downstream geneLOC668655, LOC674701, Vapa, Txndc2, Rab31, Ppp4r1, Ralbp1, LOC100043873, LOC100043592, Twsg1, Ankrd12, 5430411C19Rik, Ndufv2, ORF19, Ddx11, LOC100043599, LOC100043875, 1110012J17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231J23.T7 (MSMg01no231_j23.b1)MSMg01-231J23.TJ (MSMg01no231_j23.g1)
ACCAG398380AG398381
length711710
length of high quality
(start - end)
541 (129 - 669)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no231_j23.b1 PHD_FILE: MSMg01no231_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:57 2005CHROMAT_FILE: MSMg01no231_j23.g1 PHD_FILE: MSMg01no231_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCACTCCATTTCAGCAGGAAGCAATTATAAGAAGACTGTTGTCC
CAGCCCCTTAAGTTGGGGTGTATGCCTTTGGTCATTTTATGAATTATAGC
TATGTTGTCATCTTAGGGAATGCTTTACAAATAATTTTGGTCTTGTACAG
GAAGGAAATAAAATAGAGAGCTTAATCTCAGGATTTCTATCTTTCCTTTT
CTCTATCCTTTCTTTCTTAGGTAAAGAGAAGGGGGTGAATAAAAGGGGAA
TATAGTAATATTATAAGAAATTAGACAAATAGGGATGGATTATTAAATCC
ACTCTTAAACAAAAGCATTTTGTAGCCATAATTTTACATTGGTAAAGATC
TTTGCATTTTGATGCAAAATTAAACCTACATATTCTTACATTGATATAAT
TTATATATTGATACAGATTTAAAATTAATTTGTTATATTTGTATGTTTTA
ACTTCTGTATAGGTATTATACCTATAAAACTCATTTTAAAATACCAGGTT
TAGTCTCAGTCCTTTTAATGACTGCTTTTACAAACTGTTTAAAATAATAA
AGGTTAATAAACAGTCAAACTCACGGTCATATCAGATTATTAGTCTTGGA
TTAACACTTAAATATACATCCTGGGTTGTACAGATAGCAGCTGGGAGGCA
GACAACATTCC
ACGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCATTTACTCAAGAACGCCAATC
GTTGGTCTCACATTCTTTGTGTAATATATTTGCAAGTGAGGCGGATGAGC
CGAGACGGATGTATTCTAAAATGATATATTAAAACGACAGAGACATGGTT
GTCTGGCTCTCTAATTTGGGATTTATGCAGAGACAAATGACATACCATGG
ATTAGGAAGGGCTATGTGGTTTGCAGTAAGTCTGACTAAAAAGGTGAGTA
GGAGTCTGGTGTAGCAGACTTTTTCATTCTGGTATCTTCCTACATGGGGC
CAGTCTCCAACATCTANCTCNACCTCCCNTCCACCCCATCCTGCTTGCAA
GGTCCGGTGAGGTCTTCCCTTCTCCACCTCACATAAATACTCTGCCAGCC
TTCCCATTACATCATCTTTTCAAGGATCTAGTGATCTCCAAATTCTCATG
TATGCCATCTCAGCTCCCTGGACTGGTCCACCACTCAAAGCCACTGGCTG
TCTATTTCCAAGAAAGAAAACATAATGCAATCTTCACTCTTTTGATTATA
TTCTGGTTTTGTAGTGAGAAACATTACTACTCACCAATAGTCCCATTTTC
CAGCTACAGAACTTTGAATATTGCCATCCCTTAGTTGTACATAACTTACT
TGGCATGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_j23.g1 MSMg01no231_j23.g1 CHROMAT_FILE:
MSMg01no231_j23.g1 PHD_FILE: MSMg01no231_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:57 2005
         (289 letters)



>mm_chr17_65753774_65754462
          Length = 689

 Score =  557 bits (288), Expect = e-163
 Identities = 288/288 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcatttactcaagaacgccaatcgttggtctcacattctttgtgtaatatatttgcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 agcatttactcaagaacgccaatcgttggtctcacattctttgtgtaatatatttgcaag 429

                                                                       
Query: 61  tgaggcggatgagccgagacggatgtattctaaaatgatatattaaaacgacagagacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaggcggatgagccgagacggatgtattctaaaatgatatattaaaacgacagagacat 369

                                                                       
Query: 121 ggttgtctggctctctaatttgggatttatgcagagacaaatgacataccatggattagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggttgtctggctctctaatttgggatttatgcagagacaaatgacataccatggattagg 309

                                                                       
Query: 181 aagggctatgtggtttgcagtaagtctgactaaaaaggtgagtaggagtctggtgtagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aagggctatgtggtttgcagtaagtctgactaaaaaggtgagtaggagtctggtgtagca 249

                                                           
Query: 241 gactttttcattctggtatcttcctacatggggccagtctccaacatc 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gactttttcattctggtatcttcctacatggggccagtctccaacatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)