Query= MSMg01no232_a06.b1 MSMg01no232_a06.b1 CHROMAT_FILE:
MSMg01no232_a06.b1 PHD_FILE: MSMg01no232_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:25 2005
(314 letters)
>mm_chr17_11115729_11116442
Length = 714
Score = 576 bits (298), Expect = e-169
Identities = 307/310 (99%)
Strand = Plus / Plus
Query: 5 gaattcacatcactctgcagtggaagatggctggagattagctattacaaagtggactct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacatcactctgcagtggaagatggctggagattagctattacaaagtggactct 264
Query: 65 ctcacagggctttggcttacctggtgggctgataggacagatggagctgagccttgagtg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcacagggctttggcttacctggtgggctgataggacagatggagctgagccttgagtg 324
Query: 125 cctctgtcctgatattctcaatttgttcttttagtagcagatccttaagagcaacaagaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctctgtcctgatattctcaatttgttcttttagtagcagatccttaagagcaacaagaa 384
Query: 185 caaggctttgaatccatagatccttttacgtttcttctcagttttgtttgtcctttgcac 244
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 385 taaggctttgaatccatagatccttttatgtttcttctcagttttgtttgtcctttgcac 444
Query: 245 caaagctcatgcaagcactccagcaaagattcgccttcaaattacaaccttctttggtta 304
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 445 caaagctcatgcaagcactccagcagagattcgccttcaaattacaaccttctttggtta 504
Query: 305 tcagactctg 314
||||||||||
Sbjct: 505 tcagactctg 514
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space: 215025
Effective search space used: 215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no232_a06.g1 MSMg01no232_a06.g1 CHROMAT_FILE:
MSMg01no232_a06.g1 PHD_FILE: MSMg01no232_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:25 2005
(659 letters)
>mm_chr17_11310787_11311849
Length = 1063
Score = 1228 bits (635), Expect = 0.0
Identities = 650/659 (98%), Gaps = 8/659 (1%)
Strand = Plus / Minus
Query: 1 tgtgctatggaggactgagcagattcaccattataagctgaattccccatcaatggttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tgtgctatggaggactgagcagattcaccattataagctgaattccccatcaatggttta 624
Query: 61 tgcggagactgtgcaatactttgtgccacaggttattgttctgaataaaggcaagcttca 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgtggagactgtgcaatactttgtgccacaggttattgttctgaataaaggcaagcttca 564
Query: 121 ttttgcttttgtggtgtgtctctattctgtatgtgctggggcagggataacagtgataca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttttgcttttgtggtgtgtctctattctgtatgtgctggggcagggataacagtgataca 504
Query: 181 aggaatcattctgtcacccagaccagcttcaaaaccaacagaactctccagctttctcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aggaatcattctgtcacccagaccagcttcaaaaccaacagaactctccagctttctcct 444
Query: 241 ctcaagtactggggg------agacatgaggaatggaggccaccttcctctgtgatattt 294
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctcaagtact--gggaacaacagacatgaggaatggaggccaccttcctctgtgatattt 386
Query: 295 ctagagtttacaacaactctatctttattgtgaaaaagtgcataaacaaacatttgtgtt 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctagagtttacaacaactctatctttattgtgaaaaagtgcataaacaaacatttgtgtt 326
Query: 355 tggagatactgaaaaataatcatagaatctgtttgaatttatgagaaagaaattaagcta 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggagatactgaaaaataatcatagaatctgtttgaatttatgagaaagaaattaagcta 266
Query: 415 atgtgccaagaattcttctgctccctgtaacacacacacatagacacatacatggacaca 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgtgccaagaattcttctgctccctgtaacacacacacatagacacatacatggacaca 206
Query: 475 tgcgccatacaaatacatataaacacacagatatacatacatacacacagacatacaaat 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tgcgccatacaaatacatataaacacacagatatacatacatacacacagacatacaaat 146
Query: 535 ccacatatacacaggcatacacacacagatgcacatacacatgcacaaacacacacacac 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 ccacatatacacaggcatacacacacagatgcacatacacatgcacaaacacacacacac 86
Query: 595 atacatgcagacacacacatgcacacgcatggatacacacacacacacacacacacaca 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 atacatgcagacacacacatgcacacgcatggatacacacacacacacacacacacaca 27
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 80
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1063
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1053
Effective search space: 683397
Effective search space used: 683397
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
