BAC Information

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BAC

Clone NameMSMg01-232F16
Chromosome17 (Build37)
Map Location 24,227,573 - 24,357,051
singlet/doubletdoublet
Overlap genePdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik
Upstream geneLOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5
Downstream geneCcnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232F16.T7 (MSMg01no232_f16.b1)MSMg01-232F16.TJ (MSMg01no232_f16.g1)
ACCAG398890AG398891
length727729
length of high quality
(start - end)
316 (45 - 360)194 (126 - 319)
definitionCHROMAT_FILE: MSMg01no232_f16.b1 PHD_FILE: MSMg01no232_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:49 2005CHROMAT_FILE: MSMg01no232_f16.g1 PHD_FILE: MSMg01no232_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,227,573 - 24,227,884)(24,356,858 - 24,357,051)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATGCATGGCAACTGGTTAAAACAAGCCAAGAAAACAGAAATCAAA
TGAGGAAAACTGATTTGAATCAATAAACTATTAAAAAAATATATAAAGGT
CATAATGAAAGAAGAGTCTGGGCAAGTAAAACTGAAACCATGGAAGCACG
CTGTGGTTTCTTTTATCTGTTTTTTTTTGCTGGTATTTCCCAGTTATCAA
GAGAGGAAGTTTTAAAAACAAAGTATATTTAAGATCTTGTGTCTGTTTTC
AAGACAAGCTGCTTTGAAGCCAGTGACAGCAACTGCCCACAAACCCAGGT
GGTACCCCTGTTTTTTTAGTACCCACCCACTGCTAAGCATCAAGCTACAG
GGATCTTCCCACATCACACCCCTGGAAACTAAATCAATAGCATTCTGGGA
TCTCTTGGTAAAATGAAAAAGCATTCCAGAGCATTTTTAAAAAATAATCA
GAAAATCTCCGAGCCACAAACTAGCAACGCTGAGCTTTCCAGAATACCCA
GTGTCAGGCAGTGAGGGTTATAGCAGGGCACTACTTTCTCATCTACAGGT
CCAGACCACATCCTGCCTCCCATCTATCCCCCAAACAGGTAAAAGCTCAT
CCGCTGAGGAATAAGAACAGGAATCAGCCTACACAAGGTATGCTGGGCAT
TTACTTATTACAGCAAAGCAGTCAACC
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGCATGGTTCTTGACGTTCATAGCA
TGTGCACCGAGTTCTCTTGATCCCCAGGAGCTGGAACTTTTGACCCAGGC
TCTGGAGAAGGCTGTACGTGTGAGGAAAGGCGTGTCCAATGCTGGACAAA
GAGACAGAACCCCCACTCTGACATCTAAGGCAGCCACTTCTGGTGCCGCT
GCCGCCTCCCATCCTCGGGCTCCCAGCCGGGGTGGCAGCCGTGTATTGGG
TACAAGATCCACCAAGGGTATTCTGCGGGCCACAGCCCCTCCCAAGGATT
ACCCTGAGTTCAGTCNTTTCCCCCCCCCCCCCCCAAGACCCATGTAAGAA
CACAAGACCAAACTACTGCCCACCGACAAAAACTCAGGGACCATCGAATG
ACCCCGTCATCTGCTCATCACACCACAGAACTCTTCGCATTAAAGGAGAA
GGGGTAAGCTTCCCAGACGCTCGTATCCTGACAGGGCATTGAGCTGGTTG
AGGAAGCCCCTGGTGCCGACCCGTAAGGTTCATGCACTGAAGCAAACAGG
GCATAACAGGGCTGCGATGGCATCACGTTTGTCGCTCTGGAGCCTAACCA
GCCCATGAGCTCTCTGGACTGGGCGAGCACCCACCCTCCTCCAGAAGCCG
TTTTCTAAAAGCTTGTCCCAATTACGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_f16.b1 MSMg01no232_f16.b1 CHROMAT_FILE:
MSMg01no232_f16.b1 PHD_FILE: MSMg01no232_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:49 2005
         (316 letters)



>mm_chr17_24227369_24228084
          Length = 716

 Score =  603 bits (312), Expect = e-177
 Identities = 312/312 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatgcatggcaactggttaaaacaagccaagaaaacagaaatcaaatgaggaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatgcatggcaactggttaaaacaagccaagaaaacagaaatcaaatgaggaaa 264

                                                                       
Query: 65  actgatttgaatcaataaactattaaaaaaatatataaaggtcataatgaaagaagagtc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actgatttgaatcaataaactattaaaaaaatatataaaggtcataatgaaagaagagtc 324

                                                                       
Query: 125 tgggcaagtaaaactgaaaccatggaagcacgctgtggtttcttttatctgttttttttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgggcaagtaaaactgaaaccatggaagcacgctgtggtttcttttatctgttttttttt 384

                                                                       
Query: 185 gctggtatttcccagttatcaagagaggaagttttaaaaacaaagtatatttaagatctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gctggtatttcccagttatcaagagaggaagttttaaaaacaaagtatatttaagatctt 444

                                                                       
Query: 245 gtgtctgttttcaagacaagctgctttgaagccagtgacagcaactgcccacaaacccag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtgtctgttttcaagacaagctgctttgaagccagtgacagcaactgcccacaaacccag 504

                       
Query: 305 gtggtacccctg 316
           ||||||||||||
Sbjct: 505 gtggtacccctg 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no232_f16.g1 MSMg01no232_f16.g1 CHROMAT_FILE:
MSMg01no232_f16.g1 PHD_FILE: MSMg01no232_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:49 2005
         (194 letters)



>mm_chr17_24356658_24357251
          Length = 594

 Score =  375 bits (194), Expect = e-109
 Identities = 194/194 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggagctggaacttttgacccaggctctggagaaggctgtacgtgtgaggaaaggcgtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aggagctggaacttttgacccaggctctggagaaggctgtacgtgtgaggaaaggcgtgt 335

                                                                       
Query: 61  ccaatgctggacaaagagacagaacccccactctgacatctaaggcagccacttctggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ccaatgctggacaaagagacagaacccccactctgacatctaaggcagccacttctggtg 275

                                                                       
Query: 121 ccgctgccgcctcccatcctcgggctcccagccggggtggcagccgtgtattgggtacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ccgctgccgcctcccatcctcgggctcccagccggggtggcagccgtgtattgggtacaa 215

                         
Query: 181 gatccaccaagggt 194
           ||||||||||||||
Sbjct: 214 gatccaccaagggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)