CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTCTCTGTAGACCAGGCTGGCCTCAAACTCAGAGATCTGCCTGCC
AGACTTGCACAACAGGAAAAAGTAAATTTTAAATTTCATCAGGACTTGGA
GTTCAGTGCTTTATCAACAATTGTTGATCCATCTTTGGGTAAATCTGTCT
GGGCAAAGAGGGGAACTCTGCATAGAAAGGGCAGGCTTCACGTAGGCCTT
TTAAGTGCAAAGTGATTCATTTAAAGATTCACTTCACATAGTAGGTCTTC
AGTAAATGTGTGTTAGAAAATGTTGAGTGGAGGCAAGAGGAGCAAGCGAA
GGGGGTAGATAGCATTGAGATGCATCTTCTATCTCCCCCACCCCCTCAGT
GTTCCCCAGACCCTTGAGCAGGCTAAGCAGACGCCCTGCAGTTGACCAGT
GTCTCCAGAGCCTTTGGCCCTTGTTGGTTTAATTGTCTTTTTATTTCAGT
TGATCCCATAGGTCTCATTACTTCTAAAACTCGGAAAGTATTCGAAGATT
CAGAAGGTTTATGTCGGTACATTGCGCTTGTGTTACAAGGGGCTTTGAGT
GATCTTCCTGCCACCCTGAAAGCCCGCCTCTCCCGTCACCAGCCAGGTTC
TGTGTTGTCCCCTCCTGGTGTTCCACATCATGCTAGCTGCTTGCAGGGTT
CTGTGACTAGGCCCAGATCTTCTCTCCATTAACTGTTACTTGTGTACACN

NTATCTCATTTTTACTTTTAATATCTATNCCCCAAACCCTNNCTAAGTAA
GTAACGAAACGCATGGCGAGAGCTGTCTTTCAAAAAAAGGTGAANTANAG
AAGGTTTTCAAAAAAAAGGANNGNNNNAGAANGAAANAGAAAAGGAGAAA
AAAATTTTTTTCCGAAAAAAAAGAGGAAGAGAGTTGTTGGTGGTTGGATG
GTAACATGAGAAAAAAAATATATGAGGATATAAGTATGTATAAAGATTTA
AATTTTGAAGAAATAAATGAAGAATAATATTAAATTAATATTTTGAAATG
AAATAAGTAAAATATATTTTAAAAAAAAAAGGAGAAAAATAAAAGTGAAG
AATGATAAATTTTTTTTAGTTGAGGAAATATGTGAAGAAGAAAGGACAGG
AGATTTAAATTGATTTACGACCCCCGAAAGGAAGAAGGATATGGTGAGTG
AGAAGGGAGGAGGTGGCCCCCCCGGATAAACGTATTTAAAAAATNTNNTG
GAGGGGGGGGGGGGGAGAAGAAGTAAGAAGGTAGGTGATAGGGAAATAAG
AGAAGGGGAAAAGAGAATAGAAGAGATAAGAGGATATATGATAAAGAAAA
AAGGGAGGAAAGGAATATAGAGTATTGAGGAGAGTTTATAGTATTGGTGA
AAGGTTAGGAGAGAGATAAATGAGATAATAAAGAACGAATAATGAGATTG
AATAAGAGGGGAAATATAAGAATTAAAGGGATATAGTGTGCATCAAATAG
TAATATGAAAAAATGATTGTTAAGATATGTTAAGGAGAAGAGTGTGAAGT
AAATATAAAAAAAGGTATGGAGAGGGAAGAGGAGGAGTATATGAGAGAAG
TGGTGGTGAGGG

Query= MSMg01no233_c11.b1 MSMg01no233_c11.b1 CHROMAT_FILE:
MSMg01no233_c11.b1 PHD_FILE: MSMg01no233_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:49 2005
         (701 letters)



>mm_chr17_3353260_3354360
          Length = 1101

 Score = 1272 bits (658), Expect = 0.0
 Identities = 688/698 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctctctgtagaccaggctggcctcaaactcagagatctgcctgccagacttg 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctctctatagaccaggctggcctcaaactcagagatctgcctgccagacttg 263

                                                                       
Query: 64  cacaacaggaaaaagtaaattttaaatttcatcaggacttggagttcagtgctttatcaa 123
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cacaacaggaaaaagtaaaatttaaatttcatcaggacttggagttcagtgctttatcaa 323

                                                                       
Query: 124 caattgttgatccatctttgggtaaatctgtctgggcaaagaggggaactctgcatagaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caattgttgatccatctttgggtaaatctgtctgggcaaagaggggaactctgcatagaa 383

                                                                       
Query: 184 agggcaggcttcacgtaggccttttaagtgcaaagtgattcatttaaagattcacttcac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agggcaggcttcacgtaggccttttaagtgcaaagtgattcatttaaagattcacttcac 443

                                                                       
Query: 244 atagtaggtcttcagtaaatgtgtgttagaaaatgttgagtggaggcaagaggagcaagc 303
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 444 atagtaggtcttcagtaaatgtgtgttagaaaatgttgagtggaggaaagaggagcaagc 503

                                                                       
Query: 304 gaagggggtagatagcattgagatgcatcttctatctcccccaccccctcagtgttcccc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gaagggggtagatagcattgagatgcatcttctatctcccccaccccctcagtgttcccc 563

                                                                       
Query: 364 agacccttgagcaggctaagcagacgccctgcagttgaccagtgtctccagagcctttgg 423
           |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 564 agacacttgagcaggctaagcagaccccctgcagttgaccagtgtctccagagcctttgg 623

                                                                       
Query: 424 cccttgttggtttaattgtctttttatttcagttgatcccataggtctcattacttctaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cccttgttggtttaattgtctttttatttcagttgatcccataggtctcattacttctaa 683

                                                                       
Query: 484 aactcggaaagtattcgaagattcagaaggtttatgtcggtacattgcgcttgtgttaca 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aactcggaaagtattcgaagattcagaaggtttatgtcggtacattgcgcttgtgttaca 743

                                                                       
Query: 544 aggggctttgagtgatcttcctgccaccctgaaagcccgcctctcccgtcaccagccagg 603
           |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 744 aggggctttgagtgatcttcctgccaccctgaaagccctcccctcccgtcaccagccagg 803

                                                                       
Query: 604 ttctgtgttgtcccctcctggtgttccacatcatgctagctgcttgcagggttctgtgac 663
           ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 804 ttctgtgttgtcccctcttggtgttccacatcatgctagctgcttgcaggattctgtgac 863

                                                 
Query: 664 taggcccagatcttctctccattaactgttacttgtgt 701
           | ||||||||||||||||||||||||||||||||||||
Sbjct: 864 tgggcccagatcttctctccattaactgttacttgtgt 901


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space:   753881
Effective search space used:   753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)