Query= MSMg01no235_o09.b1 MSMg01no235_o09.b1 CHROMAT_FILE:
MSMg01no235_o09.b1 PHD_FILE: MSMg01no235_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:19 2005
(311 letters)
>mm_chr17_47784578_47785288
Length = 711
Score = 528 bits (273), Expect = e-154
Identities = 301/315 (95%), Gaps = 8/315 (2%)
Strand = Plus / Plus
Query: 5 gaattctttgaattctgcctggatgacatggttccctgatcccagcttgctcagagctcc 64
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 205 gaattctttgaattctgcctggatgacatggttctctgatcccagcttgctcagagctcc 264
Query: 65 tggaatgttcccataccagagtctcctctcaccagaatgatatctcccatgtacttattt 124
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggaatgtttaaataccagagtctcctctcaccagaatgatatctcccatgtacttattt 324
Query: 125 gtaatgtatgcacacacattttcttattgatttgggcagcatctttggtacagctgatgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtaatgtatgcacacacattttcttattgatttgggcagcatctttggtacagctgatgt 384
Query: 185 tataggggaggaaatttaggggtctcaagtcagaggtgagttgtccagggtctcccagct 244
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tataggggaggaagtttaggggtctcaagtcagaggtgagttgtccagggtctcccagct 444
Query: 245 catacgtggataacctgggccatacatccaagctccctggttctaaatctaagg------ 298
|||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 catacgtggataacctgggccatacacccaagctccctggttctaaatctaaggtttttc 504
Query: 299 --cttccatgatctg 311
|||||||||||||
Sbjct: 505 cacttccatgatctg 519
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space: 212004
Effective search space used: 212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no235_o09.g1 MSMg01no235_o09.g1 CHROMAT_FILE:
MSMg01no235_o09.g1 PHD_FILE: MSMg01no235_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:20 2005
(281 letters)
>mm_chr17_47960020_47960695
Length = 676
Score = 505 bits (261), Expect = e-147
Identities = 274/281 (97%), Gaps = 5/281 (1%)
Strand = Plus / Minus
Query: 1 tctgtctctgaatgagcttgagtgctttccttagagaggcatcaccgtagctctttagca 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 521 tctgtctctgaatgagcttgagtgctttccttagagaggcatcgccgtagctctttagca 462
Query: 61 ggcccattctacaaatagaggaaactgaggcacctagaccagagcaggacacaagcctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ggcccattctacaaatagaggaaactgaggcacctagaccagagcaggacacaagcctgg 402
Query: 121 cactcaagtctgcaggccccactctgctgtgcccacctgccgtgttggcataatcaatgt 180
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 401 cactcaagtctgtaggccccactctgctgtgcccac-----gtgttggcataatcaatgt 347
Query: 181 gcctcctagatctctagccagggaaacagggccaagtgtggaagtagggctcattctttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gcctcctagatctctagccagggaaacagggccaagtgtggaagtagggctcattctttt 287
Query: 241 tttttttttttttttagttttttgaggctcttgacttcttg 281
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tttttttttttttttagttttttgaggctcttgacttcttg 246
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 676
Length adjustment: 9
Effective length of query: 272
Effective length of database: 667
Effective search space: 181424
Effective search space used: 181424
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
