BAC Information

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BAC

Clone NameMSMg01-236G01
Chromosome17 (Build37)
Map Location 26,344,885 - 26,345,473
singlet/doubletsinglet
Overlap geneRgs11
Upstream geneUnkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig
Downstream geneItfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236G01.T7 (MSMg01no236_g01.b1)MSMg01-236G01.TJ (MSMg01no236_g01.g1)
ACCAG401651AG401652
length725724
length of high quality
(start - end)
589 (124 - 712)287 (75 - 361)
definitionCHROMAT_FILE: MSMg01no236_g01.b1 PHD_FILE: MSMg01no236_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:56 2005CHROMAT_FILE: MSMg01no236_g01.g1 PHD_FILE: MSMg01no236_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTGGTATTCCACCTCCCTTCCTGATGTAGGCACCCCCAAGGGAGG
GAGGCTGCTACCTGGTTTCATCCCCCAGGTTTTCTCAGTGAGAACCCTTA
ACCCTGATGGCTGCCCTGTCCTTAGCGGAAAACCTCAGCTTCTGGGAGGC
ATGTGAGGAGCTGCGCTTTGGCGGACAGGCCCAGGTCCCCACCTTGGTGG
ACTCTGTGTATCAGTAAGTGTGTGGAACTGGAAGTGGAAGCTAGTTGGCC
ATCACTTAGGCCCAGCGTGGGTTACACTTGTAGCATCCGTATCTCAGGCA
GTTCCTGGCCCCTGGAGCTGCCCGCTGGATCAACATTGACAGCAGGACGA
TGGAGCGGACCCTGGAGGGGCTGCGCCAGCCACACCGCTATGTCCTGGAT
GCAGCACAGCTTCACATCTACATGCTCATGAAGAAGGTGGGCACATCCTG
GTGTCCCGGCCATCACGGTCGGTCCCTCCCACATTCTGGTGTCCAAACCC
CTCACCCCCACTCTTTCTCTAGTTCTGGGTTTGGTTTGGTTCGGTCCGTT
TGGCTCCATCAGGAGTGGGTATTGCCTCTGTCAACTTGCTGCTCTGGTAC
CAGTAAACCAGTGTGGTGGTGGTATTCAGACCCCACATTGCCTACTGTTG
ACGGGGCTGTCCCTTTCCCACCACC
CAATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATAGTTTCAGAGTTGTAATGCTTGGA
TGATTTTTGTGCTTTATTGTGCCCAATGATTTTTGTTGGTATTTGTGATT
GTTTCACTGGATATAGTTTCTAAGAGATATAATGTTTGGTTTTTTAATGT
ATAGAATCCCCTGCTTGAGAACTGTAAAACACACTCAAATTCATACTGCC
TCTGTATTTGTTTCGTTTGTCACCACCGAATCCTTACCCACCTAGCTTCG
AGGACCCTCCTTTCAGAGACCCCCATACCTGACTGGGGTCGTCCGTGACA
GCTGGCGCCTGATTGTGCCACTCGAACCAGGTAAGCTTTCTCTCTACATT
TTTTCAAAATTCTTTTTCAGTAAAGGATAGGATTTCATCAAGAGTGCTGC
AGACTCCTCTCTAGAGAAACATCGAGTTAGGACGACAAGAACATGAGCCA
GGCGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGG
CAGATTTCTGAGTTCGAGGCAAGCCTGGTCTACAAAGTTAGTTCCAGGAC
AGCCAGGGCTATACAGAGAAACCCTGTCTCGGAAAAAAAAAAAAAGATAA
TAAGAACGTAAAAATCATGGGGCATTCTCAGTCCAAAAACAGAGGCTTGT
TCCTGGCAGTATTGAGTCATATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_g01.b1 MSMg01no236_g01.b1 CHROMAT_FILE:
MSMg01no236_g01.b1 PHD_FILE: MSMg01no236_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:56 2005
         (589 letters)



>mm_chr17_26344685_26345673
          Length = 989

 Score = 1108 bits (573), Expect = 0.0
 Identities = 585/589 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccaggttttctcagtgagaacccttaaccctgatggctgccctgtccttagcggaaaac 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 cccaggttttctcagtgagaacccttaaccctgacggctgccctgtccttagcggaaaac 260

                                                                       
Query: 61  ctcagcttctgggaggcatgtgaggagctgcgctttggcggacaggcccaggtccccacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcagcttctgggaggcatgtgaggagctgcgctttggcggacaggcccaggtccccacc 320

                                                                       
Query: 121 ttggtggactctgtgtatcagtaagtgtgtggaactggaagtggaagctagttggccatc 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 ttggtggactctgtgtatcagtaagtgtgtggaagtggaagtggaagctagttggccatc 380

                                                                       
Query: 181 acttaggcccagcgtgggttacacttgtagcatccgtatctcaggcagttcctggcccct 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 acttaggcccagcgtgggttacacttgtagcatcggtatctcaggcagttcctggcccct 440

                                                                       
Query: 241 ggagctgcccgctggatcaacattgacagcaggacgatggagcggaccctggaggggctg 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 ggagctgcccgctggatcaacattgacagcaggacgatggagcggaccctggagggtctg 500

                                                                       
Query: 301 cgccagccacaccgctatgtcctggatgcagcacagcttcacatctacatgctcatgaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgccagccacaccgctatgtcctggatgcagcacagcttcacatctacatgctcatgaag 560

                                                                       
Query: 361 aaggtgggcacatcctggtgtcccggccatcacggtcggtccctcccacattctggtgtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaggtgggcacatcctggtgtcccggccatcacggtcggtccctcccacattctggtgtc 620

                                                                       
Query: 421 caaacccctcacccccactctttctctagttctgggtttggtttggttcggtccgtttgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaacccctcacccccactctttctctagttctgggtttggtttggttcggtccgtttgg 680

                                                                       
Query: 481 ctccatcaggagtgggtattgcctctgtcaacttgctgctctggtaccagtaaaccagtg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctccatcaggagtgggtattgcctctgtcaacttgctgctctggtaccagtaaaccagtg 740

                                                            
Query: 541 tggtggtggtattcagaccccacattgcctactgttgacggggctgtcc 589
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tggtggtggtattcagaccccacattgcctactgttgacggggctgtcc 789


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)