BAC Information

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BAC

Clone NameMSMg01-237D04
Chromosome17 (Build37)
Map Location 68,548,940 - 68,549,178
singlet/doubletsinglet
Overlap genenone
Upstream genePtprm, Lrrc30, Lama1, Arhgap28
Downstream geneD930040M24Rik, EG622645, Epb4.1l3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237D04.T7 (MSMg01no237_d04.b1)MSMg01-237D04.TJ (MSMg01no237_d04.g1)
ACCAG402218AG402219
length694769
length of high quality
(start - end)
233 (107 - 339)237 (179 - 415)
definitionCHROMAT_FILE: MSMg01no237_d04.b1 PHD_FILE: MSMg01no237_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:57 2005CHROMAT_FILE: MSMg01no237_d04.g1 PHD_FILE: MSMg01no237_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCGGCCGCCTGGTTTCAAAAAATAGGTGAACTATAGAAGGTTCTCTGAA
ATTCTCAGCTACTTTCAGCACTATGCCTGCCTGCATACCACCATGCTTCC
CCCTCGGATGACAATGGATTAATCATCTGAACTGTAGGCCAGCCCCCAAT
TAAAAGTTTTCCTTTTTAAGCATTGCCATGGTCATGGCATCTCTTCCCAA
CAATAGAACAAGTGGCTAAGATACTGTCTCAAGCAAAATATGGAGGCAGA
GGTATCTAAGGAAAAACACCTAAAGTTGCCCTCTGTACACATGAACACAT
GCTCACATTGACATCATTAACATTAACATTGAGTATTTGTTTATGAAACC
CCACACATCTGAATAGACAGATATGTTTAACTTGACCTAAACAATAAACA
ATGTCAAAACAACATGATGCAATATATAATTTTTATATTTTAATGTATCA
ATTCAAAAGCAAAGCAAGAAAATATAAGATTGCCATTTAAAATATACCAG
ACTTTAAGACACTTATACTCTAGAATAATATGCTTAAAATCCAACCATGG
GCAAGTAGTTTTGAGTCTCTAGAAGCATCCCTCAGGTATAGTCACAGCAG
TAGGGTCACTCCAGTGCATTTCAGCAGTGATCAGCAATTGGTAGGACAGA
TCCAGAGGCTGCCACATTCTTACGTGCATCTGCCCTGAATCCTG
TTTTTTTTTTTTTCTTCTTTTCTTTCTTCTTAATCCTCCATCGCGGGNCC
CATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTAAAATGTTCCCAGTAAGGAGTTGGTTCCACTGCCTTGGGTC
CCTGCTTCCTGTCAGGGCTGCCCTCTATGGAACTCCATTCCAAACACACA
CCTTTTAAGCAACTATTTCTTTTAGCATTTTGAGTCCAACTGGGATTTTT
ACATGGTTTTTTTTGAATCCAGAAATAGATTTCTTCATAAGCAAACTTGA
TCTCAAGTCCCCCCAGGGCAAGGATGAGGTTGTTAGAACTTTGCCTCGGA
TTGTGGCTTTCTCACTTTGGGGCACAGGTCTCTACGGAAGAGAAGCTGTG
TTCTATGGGCATTATTTACATTTTTATCGACCAAAAAGAATTCATCTGTG
GTATTTGGCAGGAAAGACAGGTACAACCATGAGACTTTACTCATGGGGAC
AAAGCTAAGATATCATTAAACCCCAAATGCCAACATCTCCAGGGGTACAT
CTCCCTAGGCCATTGGTATCTGAATAAAAACTAGAGGCTATGGAACAATG
GTTCTCAACCTGTGGATTGCACCCCATGGCTCACATCCTATTTGGTATCA
AATGACACTTTCGCAGGGTTTTCCTCAGACCATTCAAAAACATAGATGTT
TTAATTATGAATCTTTTTTTCTTCTTAAGATTTATTTATTTTATGTTAAT
TGAACTTCACCATTTGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_d04.g1 MSMg01no237_d04.g1 CHROMAT_FILE:
MSMg01no237_d04.g1 PHD_FILE: MSMg01no237_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:57 2005
         (237 letters)



>mm_chr17_68548740_68549381
          Length = 642

 Score =  431 bits (223), Expect = e-125
 Identities = 233/239 (97%), Gaps = 5/239 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaactccattccaaacacacaccttttaagcaactatttcttttagcattttgagtcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaactccattccaaacacacaccttttaagcaactatttcttttagcattttgagtcca 260

                                                                       
Query: 61  actgggatttttacatggtttttttt-----gaatccagaaatagatttcttcataagca 115
           ||||||||||||||||| ||||||||     |||||||||||||||||||||||||||||
Sbjct: 261 actgggatttttacatgttttttttttttttgaatccagaaatagatttcttcataagca 320

                                                                       
Query: 116 aacttgatctcaagtccccccagggcaaggatgaggttgttagaactttgcctcggattg 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacttgatctcaagtccccccagggcaaggatgaggttgttagaactttgcctcggattg 380

                                                                      
Query: 176 tggctttctcactttggggcacaggtctctacggaagagaagctgtgttctatgggcat 234
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggctttctcactttggggcacaggtctctacggaagagaagctgtgttctatgggcat 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 642
Length adjustment: 9
Effective length of query: 228
Effective length of database: 633
Effective search space:   144324
Effective search space used:   144324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)