BAC Information

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BAC

Clone NameMSMg01-260B06
Chromosome17 (Build37)
Map Location 82,693,837 - 82,694,372
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043704, Slc8a1, EG668832, LOC100043707, LOC625467
Downstream geneLOC668836, EG433141, EG625514, LOC100043711, LOC100043900, AW548124, EG545226
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260B06.T7 (MSMg01no260_b06.b1)MSMg01-260B06.TJ (MSMg01no260_b06.g1)
ACCAG402841AG402842
length761759
length of high quality
(start - end)		607 (44 - 650)520 (72 - 591)
definitionCHROMAT_FILE: MSMg01no260_b06.b1 PHD_FILE: MSMg01no260_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:03 2005CHROMAT_FILE: MSMg01no260_b06.g1 PHD_FILE: MSMg01no260_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTATGTAGGTACGGCAGCATTTGTAACAACAGACTTTTTCCTCATT
TGCCACCAACAATACTAATACCAAATTACCACTGATAATTTCAAATAATA
GATGTGCTGATTAAATACCGTATAGCAGATGCTTTAGAGGTCTAGATCAC
CATCTGACACCATCCAACTAATAAAAATCCAAGATTGATGGCTCTTTATA
ATTCCTTCCACAGAAGATCAAATTAAAACATAGCTTTTCTGTGAGTCCTA
TAACTAATGAGAGGTGCGGCTTAGATCCAAACTCTCCATTCATCTTACAA
AACCATGTTTTGAAGCGTTGAATAGCATCATAATTAATTATAATAAAATT
CCCACTTATATTTTAGTGGATTTGCCCCCACTTTCCATAACCAGTAAAGG
GCAATTTGACAAATCTTACCCAAGTCTGCCTAAGACAGCACTGATCTGCT
GTACATGGAGTCAGTTATGGGGTTTGTACTTACTGCAAGTATAAAAAATG
TCAGACAATTCTGAAAGTTGTTTTCACTGGTGCAGCTATGCCATTGTGTA
CCTCAGCTACAGACTGACACTACATATTGGAAAAGTGTCCAATTTATCAA
CCATTCAAACATATTTGTTACAAATCAATGATTCCCAACTCGTGGGATGT
TGCAAAGGGAACCAAGAGTTATTCAATAAGTCTGCCACTGTCTTTGACTT
AAAAATCAATG

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGCTTTAAACCCTCCTGGGCCTGAACCTT
TTAAAAAATTTTTAAATTTTTTTAATTTTTATTTTTATCTTGGTTTGGAG
TATTCTGATGACCACTTGTATATCTTTAGAGGATTATGAGAGGTTTGCAT
TTTATCTTATCTTTATTTTACTTTGGTAAGTGGTATCTATCTAGAATATC
ATCCATTTCATTAAGATTTTCTAATTTCGTGGAGTACAGGCTTTTAAAGT
AAGACCTAAAGATCATCTGAATATTATCTGTGTCTATGGTTATCTCTCCC
CTTTCATTTCTGATTTGGTTTATTTGATACTATCTCTCTAGTTTTTTGTT
AGTTTGGCTAGGGGTCTGTATATATTGTTGATTTTTCTTAATGAAACAGC
TCTTGGTTTCTCTGATTTTTTTGTATTATTTTCTTTGTTTCTAATTAATT
TGTTTCTGCCCTGTTTTTGATTATTTCCTTCCTTCTACTCATATTTGTTG
GTGTGCTTGATATATACTGAAATTATTGGTATTGGATCATGTGTACACTG
AAATTATTGGCATTGGATCTTTCCACTTTCTTTATAGAGTCCCTTAGTGT
CTATAACTTTTCCTCATATAACTGTTTTTCTTGAATCACTACATTTTGTG
TTATGTTGTGCCTTCAGTTTCCTTGTTTTATCTTAAGGCTTTTAATTCGT
TTCGTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_b06.b1 MSMg01no260_b06.b1 CHROMAT_FILE:
MSMg01no260_b06.b1 PHD_FILE: MSMg01no260_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:03 2005
         (607 letters)



>mm_chr17_82693837_82694843
          Length = 1007

 Score =  936 bits (484), Expect = 0.0
 Identities = 523/536 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctatgtaggtacggcagcatttgtaacaacagactttttcctcatttgccacc 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gaattctctatgtaggtatggcagcatttgtaacaacagactttttcctcatttgccacc 477

                                                                       
Query: 65  aacaatactaataccaaattaccactgataatttcaaataatagatgtgctgattaaata 124
           |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 476 aacaatactagtaccaaattaccactgataatttcaaataatagatgtgctggttaaata 417

                                                                       
Query: 125 ccgtatagcagatgctttagaggtctagatcaccatctgacaccatccaactaataaaaa 184
           |||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||
Sbjct: 416 ccgtatagcagatgctttggaggtctagatcactgtctgacaccatccaactaataaaaa 357

                                                                       
Query: 185 tccaagattgatggctctttataattccttccacagaagatcaaattaaaacatagcttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tccaagattgatggctctttataattccttccacagaagatcaaattaaaacatagcttt 297

                                                                       
Query: 245 tctgtgagtcctataactaatgagaggtgcggcttagatccaaactctccattcatctta 304
           ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 296 tctgtgagtcctataactaatgagaggtgtggctcagatccaaactctccattcatctta 237

                                                                       
Query: 305 caaaaccatgttttgaagcgttgaatagcatcataattaattataataaaattcccactt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 caaaaccatgttttgaagcgttgaatagcatcataattaattataataaaattcccactt 177

                                                                       
Query: 365 atattttagtggatttgcccccactttccataaccagtaaagggcaatttgacaaatctt 424
           | ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 176 acattttagtggatttgaccccactttccctaaccagtaaagggcaatttgacaaatctt 117

                                                                       
Query: 425 acccaagtctgcctaagacagcactgatctgctgtacatggagtcagttatggggtttgt 484
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 acccaagtctgcctaagatagcactgatctgctgtacatggagtcagttatggggtttgt 57

                                                                   
Query: 485 acttactgcaagtataaaaaatgtcagacaattctgaaagttgttttcactggtgc 540
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 56  acttactgcaagtataaaaaatgtcagacatttctgaaagttgttttcactggtgc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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