Query= MSMg01no260_k13.b1 MSMg01no260_k13.b1 CHROMAT_FILE:
MSMg01no260_k13.b1 PHD_FILE: MSMg01no260_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:49 2005
(317 letters)
>mm_chr17_41281747_41282464
Length = 718
Score = 572 bits (296), Expect = e-168
Identities = 308/312 (98%), Gaps = 1/312 (0%)
Strand = Plus / Minus
Query: 7 gaattcccatgactttcc-tattgaaaaaataaatgtccatggaactctgttttatcatc 65
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gaattcccatgactttccatattgaaaaaataaatgtccatggaactctgttttatcatc 459
Query: 66 agattgtaaagaacaatactaaatgcatatgtgtatttgcaaatgggggtgtagattatg 125
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 agattgtaaagaacaatagtaaatgcatatgtgtatttgcaaatgggggtgtagattatg 399
Query: 126 gtacatagatatttctgtgtttacatgcatgtgactatatgcaattattttaacatggaa 185
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 398 gtacatagatatttctgtgtttacatgcatgtgtctatatgcaattattttaacatggaa 339
Query: 186 gaggaaataaaattatattaaaaaccttgagaatggcctggatatataagaggaggagat 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gaggaaataaaattatattaaaaaccttgagaatggcctggatatataagaggaggagat 279
Query: 246 gaaattaattagacaagtagaagttaacatgaaaaatgcatttatgtaagaaagggaaga 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gaaattaattagacaagtagaagttaacatgaaaaatgcatttatgtaagaaagggaaga 219
Query: 306 gcattttatgca 317
| ||||||||||
Sbjct: 218 gtattttatgca 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 718
Length adjustment: 9
Effective length of query: 308
Effective length of database: 709
Effective search space: 218372
Effective search space used: 218372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no260_k13.g1 MSMg01no260_k13.g1 CHROMAT_FILE:
MSMg01no260_k13.g1 PHD_FILE: MSMg01no260_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:49 2005
(632 letters)
>mm_chr17_41136171_41137202
Length = 1032
Score = 1123 bits (581), Expect = 0.0
Identities = 621/639 (97%), Gaps = 9/639 (1%)
Strand = Plus / Plus
Query: 3 tgagaagaaaatgcccagttcactaagcttaaggaagggttgaggaaacagacatgggaa 62
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tgagaagataatgcccagttcactaagcttaaggaagggttgaggaaacagacatgggaa 262
Query: 63 gtggaagctccctatcttggaacaaggacagagtagggagaagcagccctctcctatgac 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gtggaagctccctatcttggaacaaggacagagtagggagaagcagccctctcctatgac 322
Query: 123 tacacaaacctgaaagaaaacatctcatatgcatcatgcatcatacaatttcccaaggag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tacacaaacctgaaagaaaacatctcatatgcatcatgcatcatacaatttcccaaggag 382
Query: 183 ctgagaacatgtcatgcttgtctttctgggtctcagttacttttctcagaatggtcatat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctgagaacatgtcatgcttgtctttctgggtctcagttacttttctcagaatggtcatat 442
Query: 243 gcacctctgtcaaattacttgagattttcatgatttcatttttccaaacagctgaataag 302
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 443 gcacctctgtcaaattacttgagattttcatgacttcatttttccaaacagctgaataag 502
Query: 303 attccattggataaatgtaacatgttttcattatccatctacctgttggacatctgagat 362
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 503 attccattggataaatgtaacatgttttcattatccatctagttgttggacatctgagat 562
Query: 363 gtttccatttcctggctattgtgacttgagcagcaaagaacatgaatgagcaggcatctc 422
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 563 gtttccatttcctggctattgtgacttgagcagcaaagaacatgagtgagcaggcatctc 622
Query: 423 tagagtaagatatagaatcccttggaaatacatcgttcatactgcagatctatggctagc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tagagtaagatatagaatcccttggaaatacatcgttcatactgcagatctatggctagc 682
Query: 483 ttttaaaggagtctccacattggctttctcactggctgcatcagtttgctctaccacaga 542
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttttaaagaagcctccacattggctttctcactggctgcatcagtttgctctaccacaga 742
Query: 543 caggaagtgtttacctttccctgatccatgccagcatctctcccc-tcatcctccctccc 601
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 743 caggaagtgtttacctttccctgatccatgccagcatctctccccctcatcctccctccc 802
Query: 602 tccctc--------tgttctttctctctttctctctctc 632
|||||| | |||||||||||| ||||||||||
Sbjct: 803 tccctccctccctctcttctttctctctctctctctctc 841
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space: 635684
Effective search space used: 635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
