BAC Information

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BAC

Clone NameMSMg01-262J16
Chromosome17 (Build37)
Map Location 80,675,570 - 80,675,893
singlet/doubletsinglet
Overlap geneDhx57
Upstream geneLOC383277, Cdc42ep3, LOC639964, AW061290, Cyp1b1, EG668821, Arl6ip2, LOC625074, Hnrpll, Gpx4-ps, Galm, Sfrs7, 4930560E09Rik, Gemin6
Downstream geneMorn2, Sos1, Cdkl4, F420015M19Rik, Map4k3, LOC100043697, C230072F16Rik, LOC675572, EG668830, Tmem178, Thumpd2, LOC100043700, LOC100043704
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262J16.T7 (MSMg01no262_j16.b1)MSMg01-262J16.TJ (MSMg01no262_j16.g1)
ACCAG404659AG404660
length756731
length of high quality
(start - end)
172 (76 - 247)363 (67 - 429)
definitionCHROMAT_FILE: MSMg01no262_j16.b1 PHD_FILE: MSMg01no262_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:17 2005CHROMAT_FILE: MSMg01no262_j16.g1 PHD_FILE: MSMg01no262_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAATACGCGGAAT
TCTTTGTACCTTTTTCTGACTTCAGCCTACTCTATGTGGTTTAATAGATT
TGCTAATGAGTAGATTTGCATTCTGAGGCTCTAAAATACAAATGGGTGGT
TGTCTTTTACAGAAAAGTTCAGATTTGTGGTTCTTTTAAGATTTTTATAT
GATTACTTTTTAAGATAAATAATAAAACAATTGATCCTTTCTCTGTAACT
GCTAATTGTTGCCTCCCAGGAAGAGAAAATGGTTGAGAAAATTACCTTGC
TTGCTCATAATTTTGCAATCTTTTTTATGTTGCTTAGCTACAAATGTACG
TGGTTTCTTGGGAATCATTTTTCCCCCCCCCTGTATTATGTAATGCTATT
TCTTGTAAAGGTATTAGGCACCAGACTGCTCTTTTCATAGTCATTCTCTA
GAAGACAAGTATAATGTAATCTCATTGTATTTTTTATTGCTCGAAAGGTT
GCGCTGCTATATATAATTTGTTTAATGATTAAACTACATGTTTTGGAGCC
TGCTCATTGAACTTTTGCTCCATCCACCTAATATGTGTACATATGCGCAT
GCAAATGTGTTTGTAATCCATTTCTGTTGGTATTTTATTTCTTTTTTTAT
TTTACCGCGTGTACTTCACTGTCGTTTAAACTTGCTTCCTTCTTCTTTTT
ATTTTTTCACTCTCAACTTTCCTGCTTACCATCCTTCCTCAACCTATTTT
ATTTTN
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTTCGAATTCTTTGATGAAATTACTGAGTGGCCAGTCAGGG
ATAGCAAATATTCTTCTGTCCTCTACAAGTCGTTTGTCTCAGTCTTAGAA
GAGGGGAAAGGGACAGGGGTAGTGTCTCTGACTAAGAGATGGCTTCTGTG
GATAAGAAGGCAGGCTCTGGACTTAGGCTAGGATAAGCACCTTCTTGCTG
CTTTCCATGTAACCTTAGTCACTAATCCTCTCTGAGGCTCAACTGATCAT
TTGAAAAATAGGGATTTCTTTTATATATAGCAGGGCTATTGAGACGCTAA
AAAGAGTTTGTTTCTATAAATGACTTTACCTAGGACCTGAATGGCATGTA
GGTCCCTAAAGAAATGTCATTTCCCAAGACAGAAACTAACAGTTCACTAT
AAGATGAAACCAGCAACTGACGGGTAGGGTCCCAAGTCGTTGGCTCTTTG
ATTAAATGCTTACACCCTTGCTTAATTTTTCTCTGAAATAAGTAGACATT
ATCATCCAATATTTTATTATGTCCCCTTCTCTATAATAGGCACCTCTGGG
GAGGAGGAAGACAGCGAGCCCCTGTGTGACGAGGAGCACTGCTGTTCTAC
TGATTAAGATCCTACTCTTCTTCCATGACTGACGCCCTTGTGATTATCCA
CTCCTCCACAAAGTGGTGCCTCTCTGTGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_j16.g1 MSMg01no262_j16.g1 CHROMAT_FILE:
MSMg01no262_j16.g1 PHD_FILE: MSMg01no262_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:17 2005
         (363 letters)



>mm_chr17_80675563_80676325
          Length = 763

 Score =  580 bits (300), Expect = e-170
 Identities = 318/324 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctttgatgaaattactgagtggccagtcagggatagcaaatattcttctgtcctctac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ttctttgatgaaattactgagtggccagtcagggatagcaaatattcttctgtcctctac 272

                                                                       
Query: 61  aagtcgtttgtctcagtcttagaagaggggaaagggacaggggtagtgtctctgactaag 120
           ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 271 aagtcatttgtctcagtcttagaagaggggaaagggacaggggtagtatctctgactaag 212

                                                                       
Query: 121 agatggcttctgtggataagaaggcaggctctggacttaggctaggataagcaccttctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 agatggcttctgtggataagaaggcaggctctggacttaggctaggataagcaccttctt 152

                                                                       
Query: 181 gctgctttccatgtaaccttagtcactaatcctctctgaggctcaactgatcatttgaaa 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 gctgctttccgtgtaaccttagtcactaatcctctctgaggctcaactgatcatttgaaa 92

                                                                       
Query: 241 aatagggatttcttttatatatagcagggctattgagacgctaaaaagagtttgtttcta 300
           ||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  aatagggatttcagtaatatatagcagggctattgagacgctaaaaagagtttgtttcta 32

                                   
Query: 301 taaatgactttacctaggacctga 324
           ||||||||||||||||||||||||
Sbjct: 31  taaatgactttacctaggacctga 8


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space:   266916
Effective search space used:   266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)