BAC Information

Click to search

BAC

Clone NameMSMg01-263H23
Chromosome17 (Build37)
Map Location 56,934,392 - 56,934,726
singlet/doubletsinglet
Overlap geneRfx2
Upstream geneEmr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546
Downstream geneAcsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1, EG224916, Cntnap5c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263H23.T7 (MSMg01no263_h23.b1)MSMg01-263H23.TJ (MSMg01no263_h23.g1)
ACCAG405303AG405304
length743738
length of high quality
(start - end)
279 (48 - 326)337 (391 - 727)
definitionCHROMAT_FILE: MSMg01no263_h23.b1 PHD_FILE: MSMg01no263_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:26 2005CHROMAT_FILE: MSMg01no263_h23.g1 PHD_FILE: MSMg01no263_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:26 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
AACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATGGCGATCTTCCTGCCTCAGCCTCAGGACTACTGAGGCTGCA
GCACCAAGCTAGGCTCACTGCTAATAGGTCTATTCCTTTTTCACATAAGT
GCCTTTGTCTGTCCGGCAATTGGATCTTTCTAGAATGCAGTAACTATCTT
TTCCTTGAAATCATCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCAAAGAATTATTTATTTTATATATGT
GAGTACACGATAGCTGTCTTCAGACACACCAGAATAGGGCATCAGATCTC
ATCCCATTACAGATGGCTGTTTTTCACCATGCGCCCGCTGGGAATTGAAC
TCAGGACCTCTGGAAGATCAATCACCACTCTTAACCACTGAGCCCTCTCT
CCAGCCCTTGAAATCCATTTCAACCAAGCTGAAGTTCTGGGGAGGGGGTT
CTGGAAAGTAGTTGGAGTCTGCTTTCTATTCTTCAAAGAGTTATACAATT
TCCTCATTTGGTGTTTTTTGTCTATTTGGGACAGGGTCTCTAGGATAGGC
TGGACTGGAACTTCCTATGTTGTCCAAGTTGGCCTTCTTTTGGCCTACTG
TTTTTGTCCCCCCTGTTCTCTTATTTCCCTCTCACTTTTCCCTATCACCC
CTCCCTCCCTCTTCATCCCCCCCTTTTCAATCTCTTTTTTTTG
AACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAGCCTGGTGTGACNAANAA
AAAAAAAAAAAAAAAAAAGAGCCTGGAGCTAGACTGTGGGAATAAGGAGA
CAGACTGACAGAGTAAGCAGACAAACTGAGAGAGTAAGGAGATAGACTGA
GAGAGTAAGGAGATAGACTGAGAGAGTAAGGAGATAGACTGAGAGAGTAA
GGAGACAGAGACTGAGGGAGTAAGGAGATAGACTGAGGGAGTAAGGAGAT
AGACTTAGACCGTAAGGAGAAGGAAGTGAATTAGCCTAGAGATAGACTTA
CACAGTAAGGAGAGGGGATTTTTTTAACGCTCACTGCCTAGAGGAATTAA
GTAATCGATCTTAAATTATATGCCCCCGAGCAGGGTGTAAGTAGAAAAAC
TTACCTCACACATGTAATAGAAGCTTATGCTAATTCAAGTTACATAAAAA
GAAGGAAACATATGTACTCACAGATATATTAATTTCCATAGAAGGGAAGA
TTTAAGTATACTTAGATAAATAAATAAATGAGGCTTTTGATCTTAAATTA
TAGTTCCAAAAGCAGGGGGTAGGAAGACTAACCTATCTCAGACAGTAGAA
ACTTAGGCCTCAATCTCACTATTTAAAATTAATCATGTAAGAACAAAACA
GGAGATGGTAGGGGAGTGCTGTTTCCACAGATAATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_h23.g1 MSMg01no263_h23.g1 CHROMAT_FILE:
MSMg01no263_h23.g1 PHD_FILE: MSMg01no263_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:26 2005
         (337 letters)



>mm_chr17_56934192_56934928
          Length = 737

 Score =  594 bits (307), Expect = e-174
 Identities = 328/335 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaggaattaagtaatcgatcttaaattatatgcccccgagcagggtgtaagtagaaaaac 60
           |||||||||||||||||||||||||||||||| |   |||||||||||||||||||||||
Sbjct: 201 gaggaattaagtaatcgatcttaaattatatgtcaaagagcagggtgtaagtagaaaaac 260

                                                                       
Query: 61  ttacctcacacatgtaatagaagcttatgctaattcaagttacataaaaagaaggaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 261 ttacctcacacatgtaatagaagcttatgctaattcaagttacataaaaggaaagaaaca 320

                                                                       
Query: 121 tatgtactcacagatatattaatttccatagaagggaagatttaagtatacttagataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgtactcacagatatattaatttccatagaagggaagatttaagtatacttagataaa 380

                                                                       
Query: 181 taaataaatgaggcttttgatcttaaattatagttccaaaagcagggggtaggaagacta 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaataaatgaggcttttgatattaaattatagttccaaaagcagggggtaggaagacta 440

                                                                       
Query: 241 acctatctcagacagtagaaacttaggcctcaatctcactatttaaaattaatcatgtaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acctatctcagacagtagaaacttaggcctcaatctcactatttaaaattaatcatgtaa 500

                                              
Query: 301 gaacaaaacaggagatggtaggggagtgctgtttc 335
           |||||||||||||||||||||||||||||||||||
Sbjct: 501 gaacaaaacaggagatggtaggggagtgctgtttc 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)