BAC Information

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BAC

Clone NameMSMg01-267F16
Chromosome17 (Build37)
Map Location 67,562,784 - 67,563,103
singlet/doubletsinglet
Overlap genePtprm
Upstream geneLOC100043875, 1110012J17Rik, LOC100043876, Rab12, 9130404H23Rik
Downstream geneLrrc30, Lama1, Arhgap28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267F16.T7 (MSMg01no267_f16.b1)MSMg01-267F16.TJ (MSMg01no267_f16.g1)
ACCAG408098AG408099
length755741
length of high quality
(start - end)		321 (45 - 365)289 (76 - 364)
definitionCHROMAT_FILE: MSMg01no267_f16.b1 PHD_FILE: MSMg01no267_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:24 2005CHROMAT_FILE: MSMg01no267_f16.g1 PHD_FILE: MSMg01no267_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTCACCTCACATTCTATGCAGGAATCCTTTGTCAGACTATGAGAA
ATGGCAATGTGTCATCCACTGGAACTTAGCAGCACTCTGTTAAAGGTGCC
ACGCCCTAGAAGGTGGATGAGGAACACTGTACGAAGAATCCCTTTTCGAT
GCTACGCTGGTCCATCATTCTCCAGGTAATGACAATGTTTGAATGTCTGA
GCTTTCTATACAGATATATGCTCAAACTCAAGGAATCCTCCGTGGAGAGC
AACATGTTAATGACATAAATAACTGAGTCCTTTGTAAAAATTTTTGTCCC
TTTTTTAAAGAAATATTTTTAGATGCCCCCCACGCGGTGACACGTTCGGA
TAACAATGACTCTTGACACCCGGGTGCACAGACATCCCCATAAACAGGAA
CTCCCCAGCAGGAGCACTTCCTCCCCTGGGATCTGTAATTTGGCTGTTGC
CCCAGGGAACTGATGAAAGCAATTACAGGGGGCACGGAGGCTGACATCCC
TGCATCTGCTGAGGCGAAGCCAGCAGGGGAGATTCATTTGTACCTCAGGA
ATTCATGGTTTCCTCCACAATGCAACCCTGCGGGCTGATACTCATCTCAT
CTGAGGCTGGCACAACTTTTGAAATGACACTTCCTCATATTTACAGTGCC
AGCCTTAAAGGTTAGCCCACTTGTACGATCAGATTTGTCAGAGGTAACCC
ACGCG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTAGCACTGTTGGTGAGGGGGAAAT
TGTTACATTTCTGCAGTTTGATTTGGCAGCCCATAGGGAAGCCTTAAAAT
ATGCATGTTCTTTGACACATAAATTGCCCTTCTAAGAATTCTCTTAAAGA
AATAATAATGGAAATGGTTTAAGCTTTCATTACAAAGAACTTCCAGACAG
CATAACGTTTGACAGTAAAAGATTAATGCCGTCTAAATATCCAAAAGAGA
ATGGTTAAATAAATTATACTTCATTCACACAATAAAATGAGATTTGGGGT
TCTGACTTGATATGGTCCTATGTCCCCCCCCCCACGCTGGGAGTGGGAAC
CACAGGTCTCAGAGCATCTCCGCGCCCAGAGAACAGGCTGAGAGTTTGTG
TCAACTTGACACAAGCTGGAGTTATCACAGAGAAAGGAGCGTCAGGTGAG
GAAATGCTTCCATGAGATCCAACTGTAAAGCATTTTTTTTCAATTAGTAA
TCAAGGGTGGGAAGTCCCGTTGTGGGTGGTGCTGTCTCTGCGCTGGTGTC
ATGGGTTCTATAAAAAAGTAAGTTGATCAAGCCAAGGGCGAAAGCCAGTA
AATAATATCCCTCCGTGTCCTCTCATCAAATCCTGCTTCTCTGACTGCAT
GAGTTCCTGCCCTAAATTTCTTTGTCGAATGTAAACCTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_f16.b1 MSMg01no267_f16.b1 CHROMAT_FILE:
MSMg01no267_f16.b1 PHD_FILE: MSMg01no267_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:24 2005
         (321 letters)



>mm_chr17_67562580_67563303
          Length = 724

 Score =  569 bits (294), Expect = e-166
 Identities = 313/320 (97%), Gaps = 3/320 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattcacctcacattctatgcaggaatcctttgtcagactatgagaaatggcaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattcacctcacattctatgcaggaatcctttgtcagactatgagaaatggcaat 264

                                                                       
Query: 65  gtgtcatccactggaacttagcagcactc--tgttaaaggtgccacgccctagaaggtgg 122
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 265 gtgtcatccactggaacttagcagcactctgtgttaaaggtgccacgccctagaaggtgg 324

                                                                       
Query: 123 atgaggaacactgtacgaagaatcccttttcgatgctacgctggtccatcattctccagg 182
           |||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 325 atgaagaacactgtacgaagaatcccttttcgatgctacgctggttcatcattccccagg 384

                                                                       
Query: 183 taatgacaatgtttgaatgtctgagctttctatacagatatatgctcaaactcaaggaat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taatgacaatgtttgaatgtctgagctttctatacagatatatgctcaaactcaaggaat 444

                                                                       
Query: 243 cctccgtggagagcaacatgttaatgacataaataactgagtcctttgtaaaaa-ttttt 301
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 445 cctcagtggagagcaacatgttaatgacataaataactgagtcctttgtaaaaaattttt 504

                               
Query: 302 gtcccttttttaaagaaata 321
           ||||||||||||||||||||
Sbjct: 505 gtcccttttttaaagaaata 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 724
Length adjustment: 9
Effective length of query: 312
Effective length of database: 715
Effective search space:   223080
Effective search space used:   223080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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