BAC Information

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BAC

Clone NameMSMg01-268C13
Chromosome17 (Build37)
Map Location 79,402,768 - 79,403,069
singlet/doubletsinglet
Overlap genePrkcn
Upstream geneLOC668795, LOC383275, Crim1, Fez2, LOC100043888, Hdac1-ps, Vit, Strn, Heatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik
Downstream geneLOC675425, Qpct, LOC668812, LOC383277, Cdc42ep3, LOC639964, AW061290, Cyp1b1, EG668821, Arl6ip2, LOC625074
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268C13.T7 (MSMg01no268_c13.b1)MSMg01-268C13.TJ (MSMg01no268_c13.g1)
ACCAG408676AG408677
length726732
length of high quality
(start - end)
320 (46 - 365)303 (77 - 379)
definitionCHROMAT_FILE: MSMg01no268_c13.b1 PHD_FILE: MSMg01no268_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:23 2005CHROMAT_FILE: MSMg01no268_c13.g1 PHD_FILE: MSMg01no268_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGATAATTGCCATATATACCATATATACCATATATAACACCTTAC
ATGCCCTTCTCTTCCTCTTCTTCCTCCTCCTCTTCCTCTTCCTCCTCTTC
CTCCTCCTCCTCTTCCTCCTCCCCTTTTGTATTTTTTGGAATGGCAAGGA
CACTTAAAATATACTCCCAAGCCATTTATAAATATGCAATTTGTTAAGTC
ACTCAGTTTCCTTTCATAATTTCATTAAGAAAAGCCAGGTGCACATCTGT
TATGCTAGCCATTGGGAGTCAGGCAAAATGATCAAGGCCAGTTTGAGCCA
CACAGCGAACCTGATGTCAGGCCAGCCCCACGCTACACAGAAAGCCTTGG
GCCATCCTGAGCTACACAACCTGAAGCCAGCCTGAGCTACACACAAAGCT
TGAGGCCAGACTGCCTTACCAAAACAGAACAAATGGTGCTAAAGTTTTAT
TTTATTACCTTTATTTACTTTAAAATGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGCTTCCCCCCCCCNNTCCNCCTTTTTCCCCTCCCTCTT
CCCTCCTATTTTNTTTTCTCCCTCTTTTTTTTTTTTTATCCTCTCNCCTC
CCCCTAGTAATCCACTCGTGCATTCTCCTGTTCCGACCAGACTCTTACAG
TATATCAGTATATCCTTCTCCTTTTC
TCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTGTTTACAAACAAAACAAATA
AAAATCCCATGAAGTCTAATGCTGAAGTCCTCAACTTTGTCTATTTTTTC
AAGAATCTTTTGTCCATCTGATCCTTTGCCTTTCCATATAAATTTTAAAA
CCAGTTTTTACATGATGGAAAGGGCTTTTTGAAACCTTGTAGATATTATT
TTCAGTCAGAGCTTTATGTTTTATTGTTGGTACAACCTTTTCTTTATAAG
TTTTCATGTGTTACATGGAAATACAGGCTTTTATGATACGTCCTTATCTT
TCCTAAACACATGTAACTTTGTTTTGAACATTCTTTAGGGTTTTCTGTTG
GATTATTTTGTCTTTAGGGAATCTTGCTGTTTTTCCACGTAGTGTTTCAT
TCTTCTTCTGGCTTTTGCTTTTGTATTTCTTTGCTTTGGCAGTGAGGATT
TCCAGCATAATCTTGAATAGAAGTGCATTTGCATCCTGTGTGCATTTGAA
AAAGGGAAATCTTTCTGTCTTTGACCAATCAGTATGGTGTGCGTTTGTGA
AGGTGTCCTTCATCAGGCTAAGGAGGCGCGCCCTCTTCCAGGTGGTGCAG
ACTGTGTCTAGGAAAGTCTGTAGTGCTTCGCTGCTCCCTGACAGNCTTGC
GTTTTTCTCTTAGTCTCTTACCATGGCACATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_c13.g1 MSMg01no268_c13.g1 CHROMAT_FILE:
MSMg01no268_c13.g1 PHD_FILE: MSMg01no268_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:23 2005
         (303 letters)



>mm_chr17_79402437_79403139
          Length = 703

 Score =  584 bits (302), Expect = e-171
 Identities = 302/302 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttgtttacaaacaaaacaaataaaaatcccatgaagtctaatgctgaagtcctcaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ttttgtttacaaacaaaacaaataaaaatcccatgaagtctaatgctgaagtcctcaact 574

                                                                       
Query: 61  ttgtctattttttcaagaatcttttgtccatctgatcctttgcctttccatataaatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ttgtctattttttcaagaatcttttgtccatctgatcctttgcctttccatataaatttt 514

                                                                       
Query: 121 aaaaccagtttttacatgatggaaagggctttttgaaaccttgtagatattattttcagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 aaaaccagtttttacatgatggaaagggctttttgaaaccttgtagatattattttcagt 454

                                                                       
Query: 181 cagagctttatgttttattgttggtacaaccttttctttataagttttcatgtgttacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 cagagctttatgttttattgttggtacaaccttttctttataagttttcatgtgttacat 394

                                                                       
Query: 241 ggaaatacaggcttttatgatacgtccttatctttcctaaacacatgtaactttgttttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ggaaatacaggcttttatgatacgtccttatctttcctaaacacatgtaactttgttttg 334

             
Query: 301 aa 302
           ||
Sbjct: 333 aa 332


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)