BAC Information

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BAC

Clone NameMSMg01-268E19
Chromosome17 (Build37)
Map Location 62,754,354 - 62,754,667
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043560
Downstream geneEfna5, Fbxl17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268E19.T7 (MSMg01no268_e19.b1)MSMg01-268E19.TJ (MSMg01no268_e19.g1)
ACCAG408777AG408778
length739826
length of high quality
(start - end)
334 (45 - 378)106 (77 - 182)
definitionCHROMAT_FILE: MSMg01no268_e19.b1 PHD_FILE: MSMg01no268_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:33 2005CHROMAT_FILE: MSMg01no268_e19.g1 PHD_FILE: MSMg01no268_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCGTTTCTAGTAGAGGAATCTGTCAACTTTCTGGGGCTGGTTTTTGTC
TCTCCATCCTTTTAGGTTTTTTGTTTGTTTGTTTGTTTCTTGTTTTGTTT
TGTTTTTAATTAGTAGTGCTTTGCTTGGAAGGAAGACAATCACAGTATGA
TCTTCATTTGTCTATGTATGTCTAGGTCCCTATGTGTAGGCAATCAGAAT
AATCAATACTAGAATTTGTTCATCAACTACTCTTTGACCTCATTATTTAA
TATTATCTTTTTGGTGTGTGTGCTCTAGGTTGAAATGTGGGACATGGATC
AATTGATTAAGATTTTATCTTCCTGCCCCTACTACACAATTATCTCAATG
AAAAAGGCAATAGAAACATGACCAGTGCAAGGCAGCCTGTTCTTTAATAT
CCAAAGAATTCATAATTGTAGATATTGAGTTCATTATTTTGATATTTGTA
TATACTTATGCAAAAGCAATTTTTGGCTTGACTGACTTGGATAATTATCT
CAGTTTGCCAATTTAATTTACTAATGGAGAATAAGTGAAGTTGGGGGAAA
TGCTTGGTGACACACATTATGATAAGGATCAAATATGGAAATGGCACCAA
CAATCTATGATTTTAATACTCCAGGAAGATTTANNAGGAGAAACTTTGAA
GTTTTATATGGATCAGTGCTCCCAGTGAGTGACCTGCAA
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACATATTCCTTTATGGATTCTTT
TCTATAGTAGCTATCAACAAACTGAATCCTATGTTCATATGATCCTAGCA
GACTCTCATTGTTATTTGGGGGGGGGGGGTTGNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTTTTTTTTNTTNNNNNNNNNNNNNNTNNN
NNNNNNNNNNNNTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCCCNNNN
NTNNTNNNNTNNTNNNNNNNNNNTTTTCCCCCCCCCAAAAAAAAAAAAAA
ACCTCTCTTGGGGGGCGGGTTTCTTTCTCTTTTTTTTATACTAATTTTCT
CATTCTTTTTTATTTTTCTATTTCTCCATGCTTTCTCCTTCCCTTTTCTT
TTCTTCCTCCTTCACTCTATACTTTTTTTCTTTCTTTCTTTTACCCTCTC
ATTTTATTTTCCCTACTCTTTCCCTTTCCCCTCTCTTTCTTTTCTATACA
TTTCCTTCACGTTAATTCCCTGTTCCTTATTATTTCGGCCTTTCCTCACC
CCTCTTTTCCCCCCTCACCAATCCTTTTTTCTCTCGTTCCTTAGCACTTA
TTCACTCCCTCTTTATATTCTCTTACTTCCCCGTTTTCTCACCCCTTCCT
CGTCTCTTCCCTCCCCTCTCTTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_e19.b1 MSMg01no268_e19.b1 CHROMAT_FILE:
MSMg01no268_e19.b1 PHD_FILE: MSMg01no268_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:33 2005
         (334 letters)



>mm_chr17_62754048_62754781
          Length = 734

 Score =  600 bits (310), Expect = e-176
 Identities = 313/314 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcgtttctagtagaggaatctgtcaactttctggggctggtttttgtctctccatc 64
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gaatccgtttctagtagaggaatctgtcaactttctggggctggtttttgtctctccatc 561

                                                                       
Query: 65  cttttaggttttttgtttgtttgtttgtttcttgttttgttttgtttttaattagtagtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cttttaggttttttgtttgtttgtttgtttcttgttttgttttgtttttaattagtagtg 501

                                                                       
Query: 125 ctttgcttggaaggaagacaatcacagtatgatcttcatttgtctatgtatgtctaggtc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctttgcttggaaggaagacaatcacagtatgatcttcatttgtctatgtatgtctaggtc 441

                                                                       
Query: 185 cctatgtgtaggcaatcagaataatcaatactagaatttgttcatcaactactctttgac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cctatgtgtaggcaatcagaataatcaatactagaatttgttcatcaactactctttgac 381

                                                                       
Query: 245 ctcattatttaatattatctttttggtgtgtgtgctctaggttgaaatgtgggacatgga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctcattatttaatattatctttttggtgtgtgtgctctaggttgaaatgtgggacatgga 321

                         
Query: 305 tcaattgattaaga 318
           ||||||||||||||
Sbjct: 320 tcaattgattaaga 307


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)