Query= MSMg01no270_e14.b1 MSMg01no270_e14.b1 CHROMAT_FILE:
MSMg01no270_e14.b1 PHD_FILE: MSMg01no270_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:54 2005
(669 letters)
>mm_chr17_43178097_43179165
Length = 1069
Score = 1162 bits (601), Expect = 0.0
Identities = 647/663 (97%), Gaps = 2/663 (0%)
Strand = Plus / Plus
Query: 4 ggaattctattttgggactctatcactgaggtagaaacagatgttttttttttaaaagca 63
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 206 ggaattctattttgggactctatcactgaggtagaaacagatgtttttttt--aaaagca 263
Query: 64 agcacagtgaacataaacgctcttttgtggggagaggagacaaaatctgactctgtagcc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agcacagtgaacataaacgctcttttgtggggagaggagacaaaatctgactctgtagcc 323
Query: 124 aggcgggccttgaacttgtgagtcttcgtgtcagcatctttagtgttgggattagaggca 183
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 324 aggcgggccttgaacttgtgagtcttcatgtcagcatctttagtgttgggattagaggta 383
Query: 184 tgggacggcaagcctggctaaccttatagctatttaacttagccttgtaaatcataaaca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgggacggcaagcctggctaaccttatagctatttaacttagccttgtaaatcataaaca 443
Query: 244 ttgcaaacaaataaagtaccaattctaggggaatagctgagcaaatgctgaactgtgcat 303
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttgcaaacaaataaagtagcaattctaggggaatagctgagcaaatgctgaactgtgcat 503
Query: 304 gtataatgggatgttttcacccagtccagagagccatttatatcgcataaaaggaacaga 363
|||||||||||| ||| ||||||||||| || | ||||||||||||||||||||||| ||
Sbjct: 504 gtataatgggatatttccacccagtccaaagggtcatttatatcgcataaaaggaacgga 563
Query: 364 cagagctacatagtttgccacagtctcgactcttttaaaccttcagaggttggaaggaaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cagagctacatagtttgccacagtctcgactcttttaaaccttcagaggttggaaggaaa 623
Query: 424 gatgccagcgtgaagaacagtcccagtgtggtaggattttgtccttttacccctcttttt 483
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 624 gatgccagcatgaagaacagtcccagtgtggtaggattttgtccttttacccctcttctt 683
Query: 484 gttagtaccccacaaatggtacaagttttgtataataaaaccattacaggaagttggaga 543
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 684 gttagtaccccacaaatggtacacgttttgtataataaaaccattacaggaagttgcaga 743
Query: 544 ggaacgttaaaacccaacttattttgccttccttaatgacttgggagactgctcagctgg 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ggaacgttaaaacccaacttattttgccttccttaatgacttgggagactgctcagctgg 803
Query: 604 atgctggggcagcactctgcctggttcagactcccagaactgtccaatttctgatgtgac 663
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 804 atgctggggcagcactctgcctggttcagactcccagaactatccaatttctgatgtgac 863
Query: 664 agc 666
|||
Sbjct: 864 agc 866
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_e14.g1 MSMg01no270_e14.g1 CHROMAT_FILE:
MSMg01no270_e14.g1 PHD_FILE: MSMg01no270_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:54 2005
(669 letters)
>mm_chr17_43262507_43263577
Length = 1071
Score = 1210 bits (626), Expect = 0.0
Identities = 666/692 (96%), Gaps = 23/692 (3%)
Strand = Plus / Minus
Query: 1 ctcagtgtgtgaacaggtggatctatttcttgtgacttctcttttctttctgcctttttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 ctcagtgtgtgaacaggtggatctatttcttgtgacttctcttttctttctgcctttttg 730
Query: 61 tttgtcctattcagttgtgttaggtgttgttttgtcttattataatctatataatagaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tttgtcctattcagttgtgttaggtgttgttttgtcttattataatctatataatagaag 670
Query: 121 cttgttttctaattagagacagaaaggtggctctggataggaggggaggaactagcagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 cttgttttctaattagagacagaaaggtggctctggataggaggggaggaactagcagga 610
Query: 181 ctagaaggagtggagattgtaattaggatatattatgtgag-aaaaaaagataagaaaga 239
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 609 ctagaaggagtggagattgtaattaggatatattatgtgagaaaaaaaagataagaaaga 550
Query: 240 agatggtctcaaaaca--gtgtaaggtgcagcagtaggttttgaaagaattaatacatag 297
|||||||||||||||| |||||||| |||||||||||||||||||||| ||| ||||||
Sbjct: 549 agatggtctcaaaacactgtgtaaggcgcagcagtaggttttgaaagaaataaaacatag 490
Query: 298 ggacaaaaagtgacctaaattatatgtgtctgtgatatatatacatcatatatacattat 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ggacaaaaagtgacctaaattatatgtgtctgtgatatatatacatcatatatacattat 430
Query: 358 atatacatcatatatacatatatacatgcatat----atacatacatg------------ 401
||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 429 atatacatcatatatacatatatacatgcatatatacatacatacatgcatatatacata 370
Query: 402 ----catgcatatatacatacatacatgtgtatatgtatacatatatatgagatacaaac 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 catacatgcatatatacatacatacatgtgtatatgtatacatatatatgagatacaaac 310
Query: 458 taatatgtatttttgaggagtttttcacacaaaggcagaatgggatatgatggtgcttct 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 taatatgtatttttgaggagtttttcacacaaaggcagaatgggatatgatggtgcttct 250
Query: 518 cctttggaacagctgagaagctataatcacatttccagttatgcagaccaaattcatgtg 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cctttggaacagctgagaagctataatcacatttccagttatgcagaccaaattcatgtg 190
Query: 578 tactgactatacccatccctgggcctgacttacagagactgagataaaatattccaaatg 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tactgactatacccatccctgggcctgacttacagagactgagataaaatattccaaatg 130
Query: 638 caaaacagagcaaggcttctggcccaagctgt 669
||||||||||||||||||||||||||||||||
Sbjct: 129 caaaacagagcaaggcttctggcccaagctgt 98
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1071
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1061
Effective search space: 699199
Effective search space used: 699199
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
