Query= MSMg01no270_k12.b1 MSMg01no270_k12.b1 CHROMAT_FILE:
MSMg01no270_k12.b1 PHD_FILE: MSMg01no270_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:22 2005
(645 letters)
>mm_chr17_6168781_6169826
Length = 1046
Score = 634 bits (328), Expect = 0.0
Identities = 346/352 (98%), Gaps = 1/352 (0%)
Strand = Plus / Minus
Query: 4 ggaattctttctcttc-atactgggctggttatggtaacagtcagctgtgagaagctgtt 62
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ggaattctttctcttcaatactgggctggttatggtaacagtcagctgtgagaagctgtt 293
Query: 63 ccaacctctcttccaccttttctgcaaactgagtttctgcccgggtctgtttgccctttc 122
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 292 ccaacctctcttccaccttttctgcacactgagtttctgcccgggtctgtttgccctttc 233
Query: 123 agcttctccctcacaaactgaaccaccctaacagcctcaccagaagctgagcaggtgcta 182
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 agcttctccctcacaaactgaaccaccctaacagcctcaccagaagctgagcaggtgctg 173
Query: 183 acaactgctcccagatctccacaactgtgagctaaaagaattcttttcctcataacctac 242
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 172 acaactgctcccagatctccacaactgtgagctaaaacaattcttttcctcataacctac 113
Query: 243 tgtcaggtgttttgttaatagcaacccaaagagaatcatgaaacttaccatcaataaatt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 tgtcaggtgttttgttaatagcaacccaaagagaatcatgaaacttaccatcaataaatt 53
Query: 303 gtatttcattgttttatgtgcatgagtggctctgcctgcgtatgtctgtata 354
||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 52 gtatttcattgttttatgtgcatgagtggttttgcctgcgtatgtctgtata 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1046
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1036
Effective search space: 657860
Effective search space used: 657860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_k12.g1 MSMg01no270_k12.g1 CHROMAT_FILE:
MSMg01no270_k12.g1 PHD_FILE: MSMg01no270_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:22 2005
(620 letters)
>mm_chr17_6020281_6021300
Length = 1020
Score = 986 bits (510), Expect = 0.0
Identities = 574/620 (92%), Gaps = 38/620 (6%)
Strand = Plus / Plus
Query: 1 tgtatttaattaattaaaaatcacttgccttggttcctaagtaagtgttctattattgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tgtatttaattaattaaaaatcacttgccttggttcctaagtaagtgttctattattgtg 298
Query: 61 aagagacaccatgagcacagcaattcttaaaaagaaagcatttaatggggcttgcttaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 aagagacaccatgagcacagcaattcttaaaaagaaagcatttaatggggcttgcttaca 358
Query: 121 gtgtcagtgggttagtccatatcatcatggcagggagcatggctacacaaaggcagacgg 180
||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 359 gtgtcggtgggttagtccatatcatcatggcagggagcatgactacgcaaaggcagacgg 418
Query: 181 gggactagaaaagtatctgaggtctgtatccagatccacagggagacgttagacctggta 240
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 419 gggactagaaaagtatctgaggtctgtatccagatccccagggagacgttagacctggca 478
Query: 241 tgggcttttgaatgctcaaagcccgcccctagtgatgcacctcccccaacaaggccacac 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 479 tgggcttttgaatgctcaaagcccgcccctcgtgatgcacctcccccaacaaggccacac 538
Query: 301 ccactccaacaaggccacacctactacaaacaaggccacatccactccaaacatggccac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ccactccaacaaggccacacctactacaaacaaggccacatccactccaaacatggccac 598
Query: 361 acactgccaacaaggcatcgacttctattccttttaaatagtgccacaatcttaacattt 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 acactggcaacaaggcatcgacttctattccttttaaatagtgccacaatcttaacattt 658
Query: 421 caggtatataaggctatgggggcaggggagcattctttttcaaatcaccacaactggtca 480
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 cagctatataaggctatgggggcaggggagcattctttttcaaatcaccacaactggtca 718
Query: 481 agttcaatgcacttgaccagtgtcaagttcaatggtcaagttcagtgcactttggccagt 540
|||||||||||||| ||||||||
Sbjct: 719 agttcaatgcactt--------------------------------------tggccagt 740
Query: 541 ggccctttactgggctaaattgaaaacatttctactgccacagaaagctacatggtttgg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggccctttactgggctaaattgaaaacatttctactgccacagaaagctacatggtttgg 800
Query: 601 tttgggccactctaatctgt 620
||||||||||||||||||||
Sbjct: 801 tttgggccactctaatctgt 820
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
