BAC Information

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BAC

Clone NameMSMg01-272L20
Chromosome17 (Build37)
Map Location 92,925,825 - 92,999,346
singlet/doubletdoublet
Overlap geneLOC676141
Upstream geneLOC100043741, LOC100043742, EG640442, LOC627395
Downstream geneLOC668877, LOC100043746, LOC100043747, LOC100043748, LOC100043907, Adcyap1, LOC676157, LOC627503
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272L20.T7 (MSMg01no272_l20.b1)MSMg01-272L20.TJ (MSMg01no272_l20.g1)
ACCAG411938AG411939
length749748
length of high quality
(start - end)		677 (71 - 747)293 (73 - 365)
definitionCHROMAT_FILE: MSMg01no272_l20.b1 PHD_FILE: MSMg01no272_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:58 2005CHROMAT_FILE: MSMg01no272_l20.g1 PHD_FILE: MSMg01no272_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,998,927 - 92,999,346)(92,925,825 - 92,926,117)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTC
CACCAGGGTTGCAAAAAATTTTCAGACATGCTCCTGGATGTCAGAAGAAA
GCAAAAGACAAAGTCTTTTTTCACAGTGAATGCACTGTGAAAAGTCATAT
CATTTATATGGATATGGCTGTTTTATCAAAAAAAAAGGTTTAAAGATGAC
AAAAACAAACAAACAAACAAAACCCCAACCAAACAAAAGAACACTAAATC
CTAGTTATATGATTTTAACAAATGAATACTCAGGAACCAGAAGCTGTGAT
TAAAGCCAGTTAGCTCAGAGTGTTTTAGAAAGCACCCAGTTGACCTAACT
ACCACAATCATCCCAAAAGGAAAAAGCTCTTCCTTTCCTACAAATACCAT
TCAACTCAAAGATGCTCCTTTCTGTTAACTCCCTGTTGGCTGATTAATGC
CCTGCATCTTGGCCTTCAGTTGACATTATTTAGCTCTTTGATTAAAGGTG
TATGCTAGGGTAGCCACAGCATAAGTACTTGTATACAGTAAACAGAAATC
TCTGTGATCAAAGGCAGAACCTTACAAGGTTTAGAATCAGTTAACAGTCT
CTGGTCTTACGCTGTGATCAAATATCACACATCCTCAAGTTGTGGTTTTT
TTGTGTTTGTTTGTTTTTGATTTTTAACTCTTGGTTCTATAAGATATTTG
CAATTGAGTCATTGCCCTTTTGCACGACATTGTGGGACACTCAATCCTN

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTATTCAGAGGTATTTATTTACACATTAT
GGTGTCAGGCTGTTGAGTGTGATTTAGATTTCCCGCTGTTTTTCTTTAGG
CAAGAGAGGAGGTCATAGCTCCTGTTTGAAGAATTAGACTAATTGCAGTA
AACACCAGAGATTCTCAATGAATGTGTAAAAAAATATCAATTTTATAGCA
GTATTATTTAATTTTACAGTGTGTTATAATATATTTATGAAGTTTCAACA
TCAAAAATAGGAATAAAGAGGAGGAACATAAACAAAAATAAAATGAAAGT
GGACCCCATGCCCAGTATTCTAACGCCCTCCCCTCAGGGAAGCAGGAAAA
TATTCAAAAAAGATGATAGATTTACCAACAAAAGTCCTTTAAAATTGTTT
CTCAAGCATTGAAAAACTTAGGTGTGGTGGAAACAGAAAATGCCATAACA
GAAAGTTTGTATCAACATTCTCAACAATGATCAATAAATTTATTATATTA
TGACACATAGAGTTTAAAATTGGAACTAGAATTGAGGCTTCTTAACTGAT
CCCTTCCTGTATTACATTTCAGTTAAGAAATTAATCTACAGTCTTGATTT
TTCAAAAATTATATTTTTATAGGTGCAACAAACTTTATTAATGGTAATCA
AGAGTAGGACTCCCTAGGCCCTCTTGTTATTATGGGAGTCTTGGATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_l20.b1 MSMg01no272_l20.b1 CHROMAT_FILE:
MSMg01no272_l20.b1 PHD_FILE: MSMg01no272_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:58 2005
         (677 letters)



>mm_chr17_92998270_92999346
          Length = 1077

 Score =  797 bits (412), Expect = 0.0
 Identities = 418/420 (99%)
 Strand = Plus / Minus

                                                                        
Query: 258  gaaagcacccagttgacctaactaccacaatcatcccaaaaggaaaaagctcttcctttc 317
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1077 gaaagcacccagttgacctaactaccacaatcatcccaaaaggaaaaagctcttcctttc 1018

                                                                        
Query: 318  ctacaaataccattcaactcaaagatgctcctttctgttaactccctgttggctgattaa 377
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1017 ctacaaataccattcaactcaaagatgctcctttctgttaactccctgttggctgattag 958

                                                                        
Query: 378  tgccctgcatcttggccttcagttgacattatttagctctttgattaaaggtgtatgcta 437
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957  tgccctgcatcttggccttcagttgacattatttagctctttgattaaaggtgtatgcta 898

                                                                        
Query: 438  gggtagccacagcataagtacttgtatacagtaaacagaaatctctgtgatcaaaggcag 497
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897  gggtggccacagcataagtacttgtatacagtaaacagaaatctctgtgatcaaaggcag 838

                                                                        
Query: 498  aaccttacaaggtttagaatcagttaacagtctctggtcttacgctgtgatcaaatatca 557
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837  aaccttacaaggtttagaatcagttaacagtctctggtcttacgctgtgatcaaatatca 778

                                                                        
Query: 558  cacatcctcaagttgtggtttttttgtgtttgtttgtttttgatttttaactcttggttc 617
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777  cacatcctcaagttgtggtttttttgtgtttgtttgtttttgatttttaactcttggttc 718

                                                                        
Query: 618  tataagatatttgcaattgagtcattgcccttttgcacgacattgtgggacactcaatcc 677
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717  tataagatatttgcaattgagtcattgcccttttgcacgacattgtgggacactcaatcc 658


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no272_l20.g1 MSMg01no272_l20.g1 CHROMAT_FILE:
MSMg01no272_l20.g1 PHD_FILE: MSMg01no272_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:58 2005
         (293 letters)



>mm_chr17_92925625_92926317
          Length = 693

 Score =  567 bits (293), Expect = e-166
 Identities = 293/293 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattcagaggtatttatttacacattatggtgtcaggctgttgagtgtgatttagatttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattcagaggtatttatttacacattatggtgtcaggctgttgagtgtgatttagatttc 260

                                                                       
Query: 61  ccgctgtttttctttaggcaagagaggaggtcatagctcctgtttgaagaattagactaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccgctgtttttctttaggcaagagaggaggtcatagctcctgtttgaagaattagactaa 320

                                                                       
Query: 121 ttgcagtaaacaccagagattctcaatgaatgtgtaaaaaaatatcaattttatagcagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgcagtaaacaccagagattctcaatgaatgtgtaaaaaaatatcaattttatagcagt 380

                                                                       
Query: 181 attatttaattttacagtgtgttataatatatttatgaagtttcaacatcaaaaatagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attatttaattttacagtgtgttataatatatttatgaagtttcaacatcaaaaatagga 440

                                                                
Query: 241 ataaagaggaggaacataaacaaaaataaaatgaaagtggaccccatgcccag 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataaagaggaggaacataaacaaaaataaaatgaaagtggaccccatgcccag 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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