BAC Information

Click to search

BAC

Clone NameMSMg01-273L20
Chromosome17 (Build37)
Map Location 65,493,893 - 65,494,078
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC669778, Pja2, LOC100043582, Man2a1, 4930583I09Rik, LOC100043871
Downstream geneE130009J12Rik, LOC668655, LOC674701, Vapa, Txndc2, Rab31, Ppp4r1, Ralbp1, LOC100043873, LOC100043592, Twsg1, Ankrd12, 5430411C19Rik, Ndufv2, ORF19, Ddx11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273L20.T7 (MSMg01no273_l20.b1)MSMg01-273L20.TJ (MSMg01no273_l20.g1)
ACCAG412660AG412661
length722733
length of high quality
(start - end)
186 (433 - 618)305 (72 - 376)
definitionCHROMAT_FILE: MSMg01no273_l20.b1 PHD_FILE: MSMg01no273_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:10 2005CHROMAT_FILE: MSMg01no273_l20.g1 PHD_FILE: MSMg01no273_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGACTGCGCGGAATTCTT
CCATTATTCCTCAAAAATTGGTCCTGATTAAGGAAACTGATGATTTCTGA
TTAGATGTAGTAAAAAACAAATTAAACATTATAAAGATTGAGGATAAGAA
CTTTACATGATAGCCTGTTCAGTGAAATTAAATTTGACATGATTACTCAC
TACTCAATGGCTAATTTTGTGAATTGTGATTTATATACATATTTAGAAAC
TTCTTCTTCATTCTGTGTAACATATAGAATTTTTAAAGTAAAATGTCAAT
GATAATTTCCATAATTCTTTGTGTCAACCACTTTTTTAAGAAACTCAACA
CTTATTGNGATCCTTTACCTTACTGCCCCCGTCGATTTTTTAAAAATTCT
TTATAAGTCTACCATAGAATACAAAAAAAAAAATATAAATTGATTTAGGC
TTTATGGACACTTACACCAAGAACAGTTCTAACTTTCATTTCCCAGTTCA
TTAATATGCAGCCTGTGCTTACATCTGATGTCATCTAGAAAGCCAAAGAT
TGTTTGTTCAGAATATAATTTAAGTAAGCTTTGCAATCAGAACTTCCCTA
GGATGGCACGAGCCTTCCCTGTTTCTTTCCATGAAAAACAAGAGTTTTTG
GTTTCTACTTGCTGGTATAATTATCTGCCATGCGGATAAGAAGAACCCAC
TCATTATTCCTGAATTCTGAAT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTACCCCCTTTATGTATTGTCTAATGGT
TGGTGCACCAATCACGTGTCACCTCATGTATGTTTTCTGTCTCATTGTCT
GAATGATTGTTTCGTTGTCTGAATGACTGTTTTATGTTTCATGTTAAAAA
GAAAAAAAAAATGGTTAAAACTTTACCTGCTGAATCACTCTCAGTTTGCA
CAACTGAGGCTGAGAGGCCCTTCCCTTTAGCCAAAATCAAGCACAGCAGG
AGAGGTCCTGCTGAAAAACTTATAATCTACAACCTCTTAGTTCTAAGGCA
AATAAGCTGATATTTGTTCTTTCCTACACCAACATTCTCTGCAATTTTGT
GATTATTGTATTTAGCAAATGACAAAGTGTGTTTTTATCTTATAAGTATA
GCTATAAAGAGTAAAAGTCTTTAATTGATCTAAATTTATAAGATTCGTAA
AGCCACTTCATTTGGTTTTTGATTGGTCTTAAAGGTATAAATATGATCTA
CATATCTTGGTCATAGAGAATTGGCTTATAAGTTATTTAGTTATGATTAA
AAAGGTATAACACTGGTTACAAAGTTAGCTTAAGTAGTAACTCAGGGCTA
GAGTCATTTTCAAACAAAAGCACCTGGCATAAACCAGCCCAGAAAACTAG
TCCCCTAAAGATACTTCTAAATTGAGATAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_l20.b1 MSMg01no273_l20.b1 CHROMAT_FILE:
MSMg01no273_l20.b1 PHD_FILE: MSMg01no273_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:10 2005
         (186 letters)



>mm_chr17_65493693_65494278
          Length = 586

 Score =  344 bits (178), Expect = 2e-99
 Identities = 184/186 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atataaattgatttaggctttatggacacttacaccaagaacagttctaactttcatttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atataaattgatttaggctttatggacacttacaccaagaacagttctaactttcatttc 260

                                                                       
Query: 61  ccagttcattaatatgcagcctgtgcttacatctgatgtcatctagaaagccaaagattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 ccagttcattaatatgcagcctgtgcttacatctgatgtcatctagaaagccaaagagtg 320

                                                                       
Query: 121 tttgttcagaatataatttaagtaagctttgcaatcagaacttccctaggatggcacgag 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 tttgttcagaatataatttaagtaagctttgcaatcagaacttctctaggatggcacgag 380

                 
Query: 181 ccttcc 186
           ||||||
Sbjct: 381 ccttcc 386


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space:   102884
Effective search space used:   102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)