Query= MSMg01no276_o21.b1 MSMg01no276_o21.b1 CHROMAT_FILE:
MSMg01no276_o21.b1 PHD_FILE: MSMg01no276_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:57 2005
(263 letters)
>mm_chr17_44541303_44541965
Length = 663
Score = 476 bits (246), Expect = e-139
Identities = 257/262 (98%), Gaps = 3/262 (1%)
Strand = Plus / Plus
Query: 5 aaaaaaaaaaaagaaggaaa---aaaaatgcttgctcattgatttgcagtcacacctcat 61
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 202 aaaaaaaaaaaagaaagaaagaaaaaaatgcttgctcattgatttgcagtcacacctcat 261
Query: 62 atagccttgcttctgctagaaacctctcatggctctgtcattcatttgcccaaagtcttt 121
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 262 atagccttgcttctgctagaaacttctcatggctctgtcattcatttgcccaaagtcttt 321
Query: 122 ttaaatccatttacatttcctgcctgtattgcctcttggggtaatgagttccatgacctt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttaaatccatttacatttcctgcctgtattgcctcttggggtaatgagttccatgacctt 381
Query: 182 attacatgctagaggaagtagtatttattttcttgttttcctcagtttggcctcaagctc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 attacatgctagaggaagtagtatttattttcttgttttcctcagtttggcctcaagctc 441
Query: 242 acaaattgcctgtctgtcttag 263
||||||||||||||||||||||
Sbjct: 442 acaaattgcctgtctgtcttag 463
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 663
Length adjustment: 9
Effective length of query: 254
Effective length of database: 654
Effective search space: 166116
Effective search space used: 166116
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no276_o21.g1 MSMg01no276_o21.g1 CHROMAT_FILE:
MSMg01no276_o21.g1 PHD_FILE: MSMg01no276_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:57 2005
(288 letters)
>mm_chr17_44690868_44691554
Length = 687
Score = 402 bits (208), Expect = e-116
Identities = 278/322 (86%), Gaps = 39/322 (12%)
Strand = Plus / Minus
Query: 2 tggttgtaagattccaaaatgacaaggttaattgaagtatttaagaaagctggtcacagt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tggttgtaagattccaaaatgacaaggttaattgaagtatttaagaaagctggtcacagt 302
Query: 62 gtcacatcccctagaagccaagtggcacatccctacatccaagccaagagctggagattc 121
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtcacatcccctggaagccaagtggcacatccctacatccaagccaagagctggagattc 242
Query: 122 aagagtcaggcactcaaggccatatttttagattcattgcaaa---aa---t-------- 167
||||||||| ||||| ||||||||||| |||||||||||||| || |
Sbjct: 241 gagagtcaggaactcagggccatatttt-agattcattgcaaatgtaagcctggggtccg 183
Query: 168 --------------aaaataaaataaaataaaataaaataaaataaaataaaataaaata 213
|||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 182 tgagaccctgcctcaaaata---taaaataaaataaaataaaataaaataaaataaaata 126
Query: 214 aaacaataaacc-aataa----ta--agggctggggaggggacttggtgcttaagaatat 266
|| ||||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 125 aagcaataaacctaataagccttattagggctggggaggggacttggtgcttaagaatat 66
Query: 267 gcactgttcttgcaggggatcc 288
||||||||||||||||||||||
Sbjct: 65 gcactgttcttgcaggggatcc 44
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 687
Length adjustment: 9
Effective length of query: 279
Effective length of database: 678
Effective search space: 189162
Effective search space used: 189162
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
