BAC Information

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BAC

Clone NameMSMg01-288I24
Chromosome17 (Build37)
Map Location 93,478,506 - 93,478,861
singlet/doubletsinglet
Overlap genenone
Upstream geneEG640442, LOC627395, LOC676141, LOC668877, LOC100043746, LOC100043747, LOC100043748, LOC100043907
Downstream geneAdcyap1, LOC676157, LOC627503
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288I24.T7 (MSMg01no288_i24.b1)MSMg01-288I24.TJ (MSMg01no288_i24.g1)
ACCAG418356AG418357
length749754
length of high quality
(start - end)
364 (378 - 741)265 (455 - 719)
definitionCHROMAT_FILE: MSMg01no288_i24.b1 PHD_FILE: MSMg01no288_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:40 2005CHROMAT_FILE: MSMg01no288_i24.g1 PHD_FILE: MSMg01no288_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
ATGCAAATTACAGACTTTGATAAATATTTCTCAATATTGATTCACTGATT
ATGATGAATATGTGCTATGACTATAGGATACTGATAGTGACATGGTAAAG
GGATTACTTATACTTGTTGGGGCAACATGGTTATAGGACAATCCACAGCT
TTTTGTTAAATTTTGCCATATAGTCAAGACTTAAAGAGTCTCTCATACTC
TGGATTGTGAGGCTTTGGGCAAAGGGGCTAGATGGAATTAGTCAGAATTC
TGTGGAATTAGAAAAACTAAGTAACATATACATTGTAGAATAAGAATCTG
GAATATCCAATTTATTTAAAGAGCCTCTATTCCCTGATTTATTTGCTTAT
ATGATCCATTAACAACCTTGGATATTTTCAGCTCAATTCCCCATTTATAT
CAGATTAGGACTAACAGGAAGAGGACAAACGTTAGTGATAGTACTCAATA
TGAAAGGGGTGGTATTAATTATCTGATTTAACCAGGCCAGATCAGACTAT
GTTGAGAGAAGTGTTAAGTTAATTTAGTACACACCACTATTTTAGTAAAA
GGACTTAGTTGCTGAATATGATCTTTACAGAGGAGAAGCTCTGATAAATT
TGAGTGTTTTGTTGTTGTTGTCTGGAGACAGGGTTTCTCTGTATAGCCCT
GGCTGTCCTGGAACTAACTTTGTAGACCAGGCCATCCTTGAACTTAGAA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCCCCAAATTCAACAGATGTCTATAGAACATTTTTTCCTAAAA
CAAAAGAATATACCTCTTCCCCGCACCTCACAGTACCTTCTCTGAAATTG
ACCATATAATTGAAAACAAAACAGGCCTCAACAGATACAAAAAGATTGAA
ATTATCCCAGGCATCCTATCAGATCATCAGGGACTAAGACTGGTCTTCAT
TTAAAAAAAAAAATAGTAGAATGCCTACATACATGTGGAAGCAGAAAAAA
ACTCTACTCAGTGATAACCTGTTTTTTTGAAGAAATAAAGAAAGAAATTA
AAGGCTTTTTATAANTTAANGTCCCAGACGNNCCACCATTACCAAAGTTA
TGGGACACAAAGAAAGCCCCGCTAAAAAAAAAAAACATAACTATAAGTGG
CTCCAAAAAGAAAGTGGAGAGGGCATACACTAGCAACTTGCCAGCACAAC
TGAAAGATTTAGAACAAAAAGAAGCAAATTCACCTAAGAGGACTTGATGG
CAGGAAATAATCAAACTCAGGGCTGAAATCAACCAAATAGAAACAAGGAG
AACTATACAAAGAATCAACAAACCTGAAGCTGGTTCTTTGTGAAAATCAA
CAAGATAGGTAAATCCTTTTCCAGACTAACCAGAGGGCACAGAGAGAGTA
TCATATTCAACAAAATCAGAAGTTAAAAGGGTGGCATAACAACTGAAAAT
GAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_i24.b1 MSMg01no288_i24.b1 CHROMAT_FILE:
MSMg01no288_i24.b1 PHD_FILE: MSMg01no288_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:40 2005
         (364 letters)



>mm_chr17_93478381_93479139
          Length = 759

 Score =  619 bits (320), Expect = 0.0
 Identities = 350/364 (96%), Gaps = 8/364 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattccctgatttatttgcttatatgatccattaacaaccttggatattttcagctcaat 60
           ||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||
Sbjct: 481 tattccctgatttatttgcttatatgatccattaagaattttggatattttcagctcaat 422

                                                                       
Query: 61  tccccatttatatcagattaggactaacaggaagaggacaaacgttagtgatagtactca 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tccccatatatatcagattaggactaacaggaagaggacaaacgttagtgatagtactca 362

                                                                       
Query: 121 atatgaaaggggtggtattaattatctgatttaaccaggccagatcagactatgttgaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atatgaaaggggtggtattaattatctgatttaaccaggccagatcagactatgttgaga 302

                                                                       
Query: 181 gaagtgttaagttaatttagtacacaccactattttagtaaaaggacttagttgctgaat 240
           ||||||||||     |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaagtgttaa-----tttagtacacaccactattttagtaaaaggacttagttgctgaat 247

                                                                       
Query: 241 atgatctttacagaggagaagctctgataaatttgagtgttttgttgttgttgtctggag 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||   |||||
Sbjct: 246 atgatctttacagaggagaagctctgataaatttgagtgttttgttattgtt---tggag 190

                                                                       
Query: 301 acagggtttctctgtatagccctggctgtcctggaactaactttgtagaccaggccatcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 189 acagggtttctctgtatagccctggctgtcctggaactaactttgtagaccaggccagcc 130

               
Query: 361 ttga 364
           ||||
Sbjct: 129 ttga 126


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 759
Length adjustment: 9
Effective length of query: 355
Effective length of database: 750
Effective search space:   266250
Effective search space used:   266250
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)