BAC Information

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BAC

Clone NameMSMg01-292I18
Chromosome17 (Build37)
Map Location 61,145,051 - 61,320,786
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043549
Downstream geneLOC433129, EG620725, LOC100043560
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292I18.T7 (MSMg01no292_i18.b1)MSMg01-292I18.TJ (MSMg01no292_i18.g1)
ACCAG421239AG421240
length772797
length of high quality
(start - end)		319 (45 - 363)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no292_i18.b1 PHD_FILE: MSMg01no292_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:38 2005CHROMAT_FILE: MSMg01no292_i18.g1 PHD_FILE: MSMg01no292_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,320,474 - 61,320,786)(61,145,051 - 61,145,339)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGACAGAAAAGGAACTACTCTGATTAGCTGTATATCCACTGGTAAT
CCCAGCAAGCTCCATTGGATTGTTCCAAATCCATTATAACACCTATGGCT
TTAGATAAACTCATTGGTTCTTGCAACACAAAGAGACATGGACACGAGAA
AGAGACTTGTAGCAAGAAGGGTGGGTACACTGTCGTAGGAGGGAGATGAC
AGGAGATAAGTATGAGAATAGTCAGATGACTTATAGAAATGTAAGAGATT
GTCAAAGCCATTTTTAATTATTAATAAAAATAACAAAAGCAAAACAAATA
TCAATAATTTATTTTTTCTTAAGCCTCTCCGCACCCCTGCTAGTGATGGT
GTGTATAACTTTAATTGCCCCACTTAAGAGGCAGAAGAAACCTTGTCTCA
AAAAACAAAATGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA
AGGAAGGAAGGAATTCATTCCCCCCTTTTCCCTATTTCTTTACTACCCCC
CTTTTCCTTATTTTTTTTTCTTCCCCCCTAGCCTTTTCCCCTCTCTTCCC
TTTCCATTTTTTTTTTTCCTTCCCCCCTTTCCCCCTCCCCCCCTTTTATC
TTTACCCTTTTACTCCCACCTTTATCCCTCACATCTTTTGTCCCCCCTCT
TTCCCTTTCTCCCCCCTTATTTTTCGTCTTTTACTGTGACTGTCCTTCCA
CCTTGTTTGCTCTTTTGTTGTT

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGACTATAATTCAGACTGAGATAT
TCTCAATTCACATATTGGAGAGCCACTTATTCATACAAAGGTATCCTTTT
AACATGGACCACTGAAATAGGTTTAATCTTGAATAATATTTCAAAGTGTT
TTCCAAAGCCTCCAGTACCTGAGATTGCCCCAAATAGTGCCATATATTTG
AATGTTTGCATTCTAGTTGGTTATAGTGTTTAGGAAAGATTAAGAGGTGT
GACCTTTCAGCAAAATCTTGCTAGTGTAGGCAATGGTGTTATCTTTTGGA
GGCTAATTATGGGATATTTTTTTGCACCCCCCCCCCTCTAGATGGTCCAT
CCTTTTTGNCNCAGGGCCCCCCTTTGTAAAAGAAAAAAATTCCATGGGTG
AGGGTTTCCTATTCTACTATTCTTGATTTTGCTTTATATATTCTGTATTT
ACTGTTTTTCTGTTTTTCCTTTTTTAAATTCTGAACACTAAATTTTTTAT
TTTTTTCTTTTTATTTTATTATTTTTGTATTATTTTTCTTTTAACACGAA
GTTTTTTATTTCTCTATTCCCCCCCTTTTGACGTTTTGTACTTTACCTCA
TTTTCTTCTCTCCACCCCATTTTTTTTCCTCCTCCCCTTTTTTCCTACAC
TTATTTATCTTTCTTTTCTTCCTTTTTCCTACCCATCCCCTTTCCCTGTC
ATACTCTTTTTTTTTTTTTTTTATTACTATACACCCCTTTCTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_i18.b1 MSMg01no292_i18.b1 CHROMAT_FILE:
MSMg01no292_i18.b1 PHD_FILE: MSMg01no292_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:38 2005
         (319 letters)



>mm_chr17_61320322_61321040
          Length = 719

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgacagaaaaggaactactctgattagctgtatatccactggtaatcccagcaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gaattctgacagaaaaggaactactctgattagctgtatatccactggtaatcccagcaa 406

                                                                       
Query: 65  gctccattggattgttccaaatccattataacacctatggctttagataaactcattggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gctccattggattgttccaaatccattataacacctatggctttagataaactcattggt 346

                                                                       
Query: 125 tcttgcaacacaaagagacatggacacgagaaagagacttgtagcaagaagggtgggtac 184
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 345 tcttgcaacacaaagagacatggacacgagaaagagacttttagcaagaagggtgggtac 286

                                                                       
Query: 185 actgtcgtaggagggagatgacaggagataagtatgagaatagtcagatgacttatagaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 actgtcgtaggagggagatgacaggagataagtatgagaatagtcagatgacttatagaa 226

                                                                       
Query: 245 atgtaagagattgtcaaagccatttttaattattaataaaaataacaaaagcaaaacaaa 304
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 225 atgtaagagattgtcaaagccatttttaattattaataaaaataacaacagcaaaacaaa 166

                        
Query: 305 tatcaataattta 317
           |||||||||||||
Sbjct: 165 tatcaataattta 153


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no292_i18.g1 MSMg01no292_i18.g1 CHROMAT_FILE:
MSMg01no292_i18.g1 PHD_FILE: MSMg01no292_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:38 2005
         (289 letters)



>mm_chr17_61144851_61145539
          Length = 689

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agactataattcagactgagatattctcaattcacatattggagagccacttattcatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agactataattcagactgagatattctcaattcacatattggagagccacttattcatac 260

                                                                       
Query: 61  aaaggtatccttttaacatggaccactgaaataggtttaatcttgaataatatttcaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaggtatccttttaacatggaccactgaaataggtttaatcttgaataatatttcaaag 320

                                                                       
Query: 121 tgttttccaaagcctccagtacctgagattgccccaaatagtgccatatatttgaatgtt 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 tgttttccaaagcctccagtacctgagattgctccaaatagtgccatatatttgaatgtt 380

                                                                       
Query: 181 tgcattctagttggttatagtgtttaggaaagattaagaggtgtgacctttcagcaaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcattctagttggttatagtgtttaggaaagattaagaggtgtgacctttcagcaaaat 440

                                                            
Query: 241 cttgctagtgtaggcaatggtgttatcttttggaggctaattatgggat 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttgctagtgtaggcaatggtgttatcttttggaggctaattatgggat 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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