BAC Information

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BAC

Clone NameMSMg01-294A07
Chromosome17 (Build37)
Map Location 16,533,005 - 16,533,268
singlet/doubletsinglet
Overlap genenone
Upstream gene4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3, LOC100041383
Downstream geneLOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238, EG626854, LOC100041965, Riok2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294A07.T7 (MSMg01no294_a07.b1)MSMg01-294A07.TJ (MSMg01no294_a07.g1)
ACCAG422305AG422306
length738732
length of high quality
(start - end)
264 (435 - 698)289 (71 - 359)
definitionCHROMAT_FILE: MSMg01no294_a07.b1 PHD_FILE: MSMg01no294_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:35 2005CHROMAT_FILE: MSMg01no294_a07.g1 PHD_FILE: MSMg01no294_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACCAACAATTACCTAAATAAAACATGGTAAATATATGCAAAAGAATGTAA
TTAAGCCACAATTTTTTGGACAAACAGATGTATCCAGAGGCCATGATATG
TTGATTAAAATTAATTAAACACAGAAGAAAAATGTTGAAGATTGTCATTT
ATAAATGAAGCCAGAAAAACTGTTGTCATAAATTAAAGGGTAGAATGGTT
GATAGTGAGTACCGAAGAGATGTTGGGCAAGGGTGCAAAATTTCTATTAT
GTAGAAAAAAAAAACACGTTTAAGAAATCAATTGTAAAATATAATGACTA
TAATCAATATAATTATTTTATTCGCCCCCATCTACTAATTGATTTAAATG
TCCCTATGAAGAATTGCCCGCACCAAATATGATAACTACTGATCATAGAT
GTGCATATACATCTCCTTATGTATACACATAGGGAGAGCTGAACAGCATT
GTTTATGATGTGGAAAAAAGTGAAAATAAGATTAAGAATTTCTGTGATGT
GGTCTACTAAAAATCTTTTCTCCCTTAGATGAAGTAACAACACACTATTA
TACAATCTGGAATTTTACAGTATGAAAATATAATAAGGCTATGCACATAT
TTCAAAGAAGATTTCAAAAAGGCAGATGGGCCACATTGTGTGCACATGTA
TGTATCAGCATGTGTTCTTAAACATTCATAAAAATTTC
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTGATCCACTTAAACTTGAGCTTTGTACA
AGGAGATAAGAATGGATCACTTCACATTCTTCTACATAATAACTTCCAGT
TGTGCCAGCACCATTTGTTGAATATGCTCTCTTTTTTCCACTGGATGGTT
TTAGATCCCTTGACAAAGATCAAGTAACCATAGCTGTGTGGATTCATTTC
TGGGGCTTTAATTCTATTCCATTGATACACCTGTCTATTGCTGTACCAGC
ACCATGCAGTTTTTATCACAATTGCTCTGTAGTACAGTTTGAGATCAGGC
GTGGTGATTCTTTCATACCACCCCCCCATCATTGAGAAGAGTTTTTGCTA
TCCTAGATTTTTCACCACCCCAAATAAATAAAAAAATTGCCCTTTCTAAC
TCAGTGAAGAATTGAGTTGGAATTTTGATGGGGATTGCATTGAATCTGTA
GATTGCTTTTTCAAGATAGCCATTTTGACTATATTAATCCTGCCATTCCA
TGAGCATGGGAGATCTTTCCATCTTCTGAGATCTTCTTCAATTTCTTTCT
TCAGAAACTTGAAGTTCTTATCATACAGATCTTTTACTTCCTTAGCTAGA
GTCACACCAAGGTATTTTATATTAATCGTGACTATTGTGAAGGGTGTTGC
TTCCCTAATTTCTTTTCTAGCCCGTTTATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_a07.b1 MSMg01no294_a07.b1 CHROMAT_FILE:
MSMg01no294_a07.b1 PHD_FILE: MSMg01no294_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:35 2005
         (264 letters)



>mm_chr17_16532805_16533468
          Length = 664

 Score =  495 bits (256), Expect = e-144
 Identities = 262/264 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actactgatcatagatgtgcatatacatctccttatgtatacacatagggagagctgaac 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 464 actactgatcatagatgtgcatatacatctccttatgtatacacagagggagagctgaac 405

                                                                       
Query: 61  agcattgtttatgatgtggaaaaaagtgaaaataagattaagaatttctgtgatgtggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 agcattgtttatgatgtggaaaaaagtgaaaataagattaagaatttctgtgatgtggtc 345

                                                                       
Query: 121 tactaaaaatcttttctcccttagatgaagtaacaacacactattatacaatctggaatt 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tactaaaaagcttttctcccttagatgaagtaacaacacactattatacaatctggaatt 285

                                                                       
Query: 181 ttacagtatgaaaatataataaggctatgcacatatttcaaagaagatttcaaaaaggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ttacagtatgaaaatataataaggctatgcacatatttcaaagaagatttcaaaaaggca 225

                                   
Query: 241 gatgggccacattgtgtgcacatg 264
           ||||||||||||||||||||||||
Sbjct: 224 gatgggccacattgtgtgcacatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)