BAC Information

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BAC

Clone NameMSMg01-294F13
Chromosome17 (Build37)
Map Location 63,169,412 - 63,169,722
singlet/doubletsinglet
Overlap geneEfna5
Upstream genenone
Downstream geneFbxl17, Ppia-ps17_1026.1, LOC638867, LOC668677
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294F13.T7 (MSMg01no294_f13.b1)MSMg01-294F13.TJ (MSMg01no294_f13.g1)
ACCAG422544AG422545
length732737
length of high quality
(start - end)
312 (50 - 361)---
definitionCHROMAT_FILE: MSMg01no294_f13.b1 PHD_FILE: MSMg01no294_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:00 2005CHROMAT_FILE: MSMg01no294_f13.g1 PHD_FILE: MSMg01no294_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCCTCCTGAACTACATCTTTAGCTAATATCCTTGGCAAGTTA
CACAACATCTCCAAATATCAATTTCCCCTTTCATAAAGTCAAGATGATAA
TTGCTGTCTCATACAGCTACCCAATAGTGCCACAGCCATCAAGTACACTT
ATGTACAGTAGTCAACATCACCTGCCCCTTCTGGAATAAGCATATATCAC
TGTCCTTTAAATATATTCATTATGAATGGAAGGGTCCCCCCCCAAATCTG
CCAAAGCTGTAAATAATTGTGTTTTCCTCTCCATTGTCAATTTCTTATTT
AATTTTAAATCTCNNCGTTCAACCCCNATCANTCCACATTAAGGTATTTT
TTTATCCAATCTTTCCCAATGGTTAATAAAAAAAAAAAAAAGGTTTAGTA
TAATCATAAGCAATAGTCCTATCTTCTCATGAGCAATGTTCTAAATTTCC
CAATTCCATGAAAGCCAGAATAAAGTTTATATCCTAACATACAAAATAAA
ACCCTTCAGAAATACAGTACTTGGAAGAATAATAATATTTCAACCTATTG
AGTTAAAAGAGGAGAGCAGTCTGCACTCCATCTTCCCCTACGCAGCAGGA
AGCCCCTCACACATACTTAGAGCTTAGGGAGGGGATGAACCACTGGCTTC
TGCAGGGAGCCCAGAGCTTATTTCTTCTCCTT
TTCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXTTCGNCACGAGGAGGN
NGAANNANAGAAGTTACAGGAGCGGGGCNCNNCANGNAAANGAAGNANNC
CAACCNANAAGGNACACTTGTTCCCCCANAAAATAGGGGTGGGNGAAAGG
GNGAAAGGGNNNAGGNGANNNNAANAAAGGAGGGNAGGNNNANGGAAAAN
NNANNAGAGGAGGNNAGNNNNANNGGGGAGAGGGAGAANNGGGGAAANNG
NGNAATTGGATAAGNTTNGTTNATTTTATTANAGNATGGTAGAAAGAANA
AGGGNAGAAGNAGAAAGGTTTTTTTTTTTTNGNANAAANANNNAAAAAAA
GGNNGNANNGNTTTTTTTTTTCCCCCCCCCCCCCCCCGGAANNATNAGAG
GAGGAANNANAAANAGAGNGANNAAAAANNNCAACCNAAAACGGGGNNNG
GNNAGGAGGGAAAAGCANGGAGAAGCNGGAACCACNCAAGCCAAGGACAA
AGCAACAGGGCACACCCCGAAAACAAAGGAAAAGGACCCACAGCGGAGAA
GAAAACACNGCGAACAACCCAGGGAACACGAAGAAGCCGAGCAGGCCCCA
AGCAGAAGCCCACACCCCCACAGACGAGCGGCCGAAAAACCGGAAAGAGA
CCCGAACCCAACTCGATTCGTAGCAAGACCCCCCAAACCAGCCGCCAAAC
CACGACAGCCACAGGGGGCGCACCACACCGGAACGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_f13.b1 MSMg01no294_f13.b1 CHROMAT_FILE:
MSMg01no294_f13.b1 PHD_FILE: MSMg01no294_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:00 2005
         (312 letters)



>mm_chr17_63169208_63169922
          Length = 715

 Score =  555 bits (287), Expect = e-162
 Identities = 304/311 (97%), Gaps = 3/311 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccctcctgaactacatctttagctaatatccttggcaagttacacaacatctcca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccctcctgaactacatctttagctaatatccttggcaagttacacaacatctcca 264

                                                                       
Query: 65  aatatcaatttcccctttcataaagtcaagatgataattgctgtctcatacagctaccca 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatatcaatttcctctttcataaagtcaagatgataattgctgtctcatacagctaccca 324

                                                                       
Query: 125 atagtgccacagccatcaagtacacttatgtacagtagtcaacatcacctgccccttctg 184
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 atagtgccacagccgtcaagtacacttatgtacagtagtcaacatcacctgccctttctg 384

                                                                       
Query: 185 gaataagcatatatcactgtcctttaaatatattcattatgaatggaagggt---ccccc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||
Sbjct: 385 gaataagcatatatcactgtcctttaaatatattcattatgaatggaagggttccccccc 444

                                                                       
Query: 242 cccaaatctgccaaagctgtaaataattgtgttttcctctccattgtcaatttcttattt 301
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 445 cccaaatctgccaaagctgtaaataactgtgttttcctctccattgtcaatttcttattt 504

                      
Query: 302 aattttaaatc 312
           |||||||||||
Sbjct: 505 aattttaaatc 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 715
Length adjustment: 9
Effective length of query: 303
Effective length of database: 706
Effective search space:   213918
Effective search space used:   213918
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)