Query= MSMg01no296_n01.b1 MSMg01no296_n01.b1 CHROMAT_FILE:
MSMg01no296_n01.b1 PHD_FILE: MSMg01no296_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:06 2005
(319 letters)
>mm_chr17_50746154_50746872
Length = 719
Score = 607 bits (314), Expect = e-178
Identities = 314/314 (100%)
Strand = Plus / Plus
Query: 5 gaattccttgataccaaggaccttatgatgtttcttgaggcagaacagggtgtagcacat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttgataccaaggaccttatgatgtttcttgaggcagaacagggtgtagcacat 264
Query: 65 atcaatgaggaaataagcctggaaattattcacaaatacgagccatccaaagaaggccag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atcaatgaggaaataagcctggaaattattcacaaatacgagccatccaaagaaggccag 324
Query: 125 gaaaagggctggctctccatagatggattcactaactacctgatgtcacctgattgttac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaaaagggctggctctccatagatggattcactaactacctgatgtcacctgattgttac 384
Query: 185 atctttgatccggaacataagaaggtctgtcaggatatgaagcaacctctgtctcattac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atctttgatccggaacataagaaggtctgtcaggatatgaagcaacctctgtctcattac 444
Query: 245 tttataaactcatctcataatacatacttaatagaggatcagttccggggtccctctgac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttataaactcatctcataatacatacttaatagaggatcagttccggggtccctctgac 504
Query: 305 atcacgggatatat 318
||||||||||||||
Sbjct: 505 atcacgggatatat 518
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space: 220100
Effective search space used: 220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no296_n01.g1 MSMg01no296_n01.g1 CHROMAT_FILE:
MSMg01no296_n01.g1 PHD_FILE: MSMg01no296_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:06 2005
(286 letters)
>mm_chr17_50910663_50911348
Length = 686
Score = 456 bits (236), Expect = e-133
Identities = 267/286 (93%), Gaps = 15/286 (5%)
Strand = Plus / Minus
Query: 1 tttgtttagctctatacccca-ttttttaatggggttatttgaatttctggagttttaga 59
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tttgtttagctctataccccatttttttaatggggttatttgaatttctggagttttaga 557
Query: 60 agctccccagtgtcttcaaggacccacactttctctgtactatgctcaagataggctcta 119
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 556 agctccccagtgtcttcaaggactcacactttctctgtactatgcttaagataggctcta 497
Query: 120 cctgggttcaaagcaaaatcaccacagcatttaaagacaccatatccagagaagaaagaa 179
|||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 496 tctgggttcaa--------------agcatttaaaggcaccatatccagagaagaaagaa 451
Query: 180 tctgtgtattcctgggcatcctcctaactgttcatacggaatctccagttaagcttgaag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tctgtgtattcctgggcatcctcctaactgttcatacggaatctccagttaagcttgaag 391
Query: 240 taagcattgagtttgtttgttcgttcatttgtttgaatcagtatca 285
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 taagcattgagtttgtttgttcgttcatttgtttgaatcagtatca 345
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
