BAC Information

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BAC

Clone NameMSMg01-298L21
Chromosome17 (Build37)
Map Location 15,757,695 - 15,758,337
singlet/doubletsinglet
Overlap genenone
Upstream geneThbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775
Downstream gene5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3, LOC100041383, LOC100041394, LOC213781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298L21.T7 (MSMg01no298_l21.b1)MSMg01-298L21.TJ (MSMg01no298_l21.g1)
ACCAG425711AG425712
length768772
length of high quality
(start - end)
649 (48 - 696)584 (77 - 660)
definitionCHROMAT_FILE: MSMg01no298_l21.b1 PHD_FILE: MSMg01no298_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:29 2005CHROMAT_FILE: MSMg01no298_l21.g1 PHD_FILE: MSMg01no298_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCGCGG
AATTCTAAGAATGGTCGCCACCTCTTGAGCAACACTAAGATTCTGGAGGG
CAAGTGGGAAGGGTAATGAAGTCTAAATTAAGATTGCCTAGAGCTAGCCC
AGATCTATTGCAGAAACCAACCTGGTCATAAAACTCAGTAGAGATAAGAC
TTATCCCTGGAAATCCCAGATAAGTAAATTAAGGGATAGGCTTAGTGTCT
GCCTGTTTGATAACGTCCTCCACAATGTTCACATTTGAGCAACCTTGCAT
GCCATGACCTCTCCGGTGGAGGCATCCTTGCTTCACAGTGCCACAACTAT
CAGTAAGACTTTGTCAAAGATGAAGGTCTACAGTAAGCCTTCAGGTTACC
CTGACAGACAGGGGATGCTACCTGAGATTGCAGACCTGGTTTGGTTGCCT
GTGAGAGGAGCCTTGTTGCTAAGAATGTAATTATCACTGCTACAGAGACA
CAAGCAGGAAGGTCACGGGGCAGACTTAGGCTCACAGGAAGTTCTTTCTT
GTGCAATACTCTACATAGTGAAACATCTTCTCAAAACACCTAAGGGGAAA
GAGGGAAGCAGAAAAGAAAAATCACTCTTAACAACCAGGGCACGCACGGT
ACGGAAGGAAAGCTAATTTTGAGGAGATTAATGTTGGGAGTTTAGGTGAG
ACATTAATAAAGCCTATATGGGGGTGGGGAGAGCTTATGGTGAGATTCCA
ATTTGAGGCCAGACTGGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCT
GAGAAACACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTAGTGAGGATGTGGAGAAAGAGGA
GCACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAAGCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAAAAAATTGTACATAGTACTACCGGAGGATC
CCGCAATACCTCTCCTGGGCATATATCAAGAATATGTTCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAAAAAA
TGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTCATGAAATTCCTAGGCAAATGGATGAACCTGGAGGGCATCATCTTGAG
TGAGGTAACTCAATCACAAAAGAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGCCCAGAATCTTACAATACCCAAGATATAAGGTACAATTT
GCAAAACACATGAAGCTCGGCGAGAACGAAGACCAAGGTGCGGATACTTT
GCCCCTTCTTGGATATGAAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_l21.b1 MSMg01no298_l21.b1 CHROMAT_FILE:
MSMg01no298_l21.b1 PHD_FILE: MSMg01no298_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:29 2005
         (649 letters)



>mm_chr17_15757494_15758537
          Length = 1044

 Score = 1147 bits (593), Expect = 0.0
 Identities = 633/649 (97%), Gaps = 7/649 (1%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggaattctaagaatggtc-gccacctcttgagcaacactaagattctggagggcaagtgg 60
           ||||||||  |||||| | | |||||||||||||||||||| ||||||||||||||||||
Sbjct: 202 ggaattctgggaatgg-cagtcacctcttgagcaacactaaaattctggagggcaagtgg 260

                                                                       
Query: 61  gaagggtaatgaagtctaaattaagattgcctagagctagcccagatctattgcagaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagggtaatgaagtctaaattaagattgcctagagctagcccagatctattgcagaaac 320

                                                                       
Query: 121 caacctggtcataaaactcagtagagataagacttatccctggaaatcccagataagtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacctggtcataaaactcagtagagataagacttatccctggaaatcccagataagtaa 380

                                                                       
Query: 181 attaagggataggcttagtgtctgcctgtttgataacgtcctccacaatgttcacatttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attaagggataggcttagtgtctgcctgtttgataacgtcctccacaatgttcacatttg 440

                                                                       
Query: 241 agcaaccttgcatgccatgacctctccggtggaggcatccttgcttcacagtgccacaac 300
           ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 441 agcaaccttgcatgccatgacctctccagtggaagcatccttgcttcacagtgccacaac 500

                                                                       
Query: 301 tatcagtaagactttgtcaaagatgaaggtctacagtaagccttcaggttaccctgacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatcagtaagactttgtcaaagatgaaggtctacagtaagccttcaggttaccctgacag 560

                                                                       
Query: 361 acaggggatgctacctgagattgcagacctggtttggttgcctgtgagaggagccttgtt 420
           ||||||||||||||||||||||||||||||||||     |||||||||||||||||||||
Sbjct: 561 acaggggatgctacctgagattgcagacctggtt-----gcctgtgagaggagccttgtt 615

                                                                       
Query: 421 gctaagaatgtaattatcactgctacagagacacaagcaggaaggtcacggggcagactt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gctaagaatgtaattatcactgctacagagacacaagcaggaaggtcacggggcagactt 675

                                                                       
Query: 481 aggctcacaggaagttctttcttgtgcaatactctacatagtgaaacatcttctcaaaac 540
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 aggctcacaggaaattctttcttgtgcaatactctacatagtgaaacatcttctcaaaac 735

                                                                       
Query: 541 acctaaggggaaagagggaagcagaaaagaaaaatcactcttaacaaccagggcacgcac 600
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 accaaaggggaaagagggaagcagaaaagaaaaatcactcttaacaaccagggcacgcac 795

                                                            
Query: 601 ggtacggaaggaaagctaattttgaggagattaatgttgggagtttagg 649
           ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 ggtacagaaggaaagctaattttgaggagattaatgttgggagtttagg 844


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1044
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1034
Effective search space:   660726
Effective search space used:   660726
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)