BAC Information

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BAC

Clone NameMSMg01-299A14
Chromosome17 (Build37)
Map Location 21,029,212 - 21,029,533
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7
Downstream geneV1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299A14.T7 (MSMg01no299_a14.b1)MSMg01-299A14.TJ (MSMg01no299_a14.g1)
ACCAG425920AG425921
length764754
length of high quality
(start - end)
330 (45 - 374)333 (78 - 410)
definitionCHROMAT_FILE: MSMg01no299_a14.b1 PHD_FILE: MSMg01no299_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:51 2005CHROMAT_FILE: MSMg01no299_a14.g1 PHD_FILE: MSMg01no299_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAATGAGCTATTTATGTTGTAAACCTACACAAAAAGTTCTAGATAAC
TAAGGAAAGTTGGGAACAAGAGAGTTACTTCCCTGAGGAAGATCACAACA
ATTAGTTGTCCAGTAGTAAAAGGTTAGCCCTAAAACACTCACACAAGTAA
CATCATACAGAATGGGAAAATCATGTTTAGAAAGAAATCTTTGTATACAT
ATATATTTACAATAACAATTAGTGAAAAAAGAAGATAAATTTGAAGGAGA
TTAGGAAGGAGTGTAAGTGAGTATTTGAAGGGAGGAAAAAAGGAAGGAGA
AATGTTATAATTATATTATGGTCTCAAAAACAAAATGGGGAAAAAGGAAA
AAAAACACATTTAATGTGCACCAAAGAAAGCAAGAATGTCCTCTGTTTTT
ATTAAATCCACTATCTGGACTTGTCATGAAGCAGCACAAATGTTAAGTAG
AAGTGGTGGAAAATATCAGCTCCTTGCTAAAGATTGGAATATGCCAGCAT
CTCGCAAGAACATAAAGGTAATCCGAATGCTGAAAAGATTTTAGAATATT
AAAATCTATGAGTGATTATGATGGTGAAAAAATCTGTACTGTTTTAGACT
ATTTCTAAAATAACCAGCTTTCTATCACCTGTCCTTACCATATCTTTTTT
CCCCAAATTTCTTCCCCCCAGTTTCGTAACCCCCCTGCTTTCCCCACACC
CACGCTTCTTCTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAAGCTCAGGGCCTGTTCAAGGGCTG
TCTGGGACATTGATGAAACCCAGGGAGTAAAATTTAACCTGATTAAGTAC
TTGTAAAATTATTTCTTGGAAATACCTATAATACGAGAAAGCATACAGAC
CCATATGTCAGACTAAGCCGGGGACAGGGGTTGAGTATATGGGCTTTGGG
AATGCCAAGGTTCCAGGAGGGAAAAGTTTCCTTGAAACTTTTCTCCTAGT
GACTGCTTTCAGGCCCTTAGGCCTACCTTGCAGACTGCAGTGGAGTGGAC
ATAGCAATAAAGAAACTAAATACTTTCTAGAATTTAATGAAAATGAAAGG
ACAACAAAACCCAAACTTACCCCCATACAATGAAAGCAGTGTTAAGAGGA
ATGCTCACAGAGAGTTCTCTTCCCAGCAATTTAAAAGCACATCTGAAAGC
TCCAGGAAAAAATGCAGAAAGCACACCAAAGAGAAGCAGAACATGGGGGA
AAAAATCAAAACCAGGACTGATATTAACCAATTAGAAAAAAGAAAACAAT
ACTAAGTATCCACAAATTCTAAAAGCTGATATGCTGAGAAAATGAACCGG
ACAGACAAACCCCTTGCCAAACTATCTAAAAGACCAGATAGACCGTATCC
CATTTTTAAAAATTCCGAAATGAATTGGGAGAACTAACCAAAGACCCCTG
AGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_a14.b1 MSMg01no299_a14.b1 CHROMAT_FILE:
MSMg01no299_a14.b1 PHD_FILE: MSMg01no299_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:51 2005
         (330 letters)



>mm_chr17_21029007_21029736
          Length = 730

 Score =  601 bits (311), Expect = e-176
 Identities = 320/323 (99%), Gaps = 1/323 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatgagctatttatgttgtaaacctacacaaaaagttctagataactaaggaaa 64
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcaatgagctaat-atgttgtaaacctacacaaaaagttctagataactaaggaaa 264

                                                                       
Query: 65  gttgggaacaagagagttacttccctgaggaagatcacaacaattagttgtccagtagta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttgggaacaagagagttacttccctgaggaagatcacaacaattagttgtccagtagta 324

                                                                       
Query: 125 aaaggttagccctaaaacactcacacaagtaacatcatacagaatgggaaaatcatgttt 184
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 325 aaaggttagccctaaaacactcacacaagtagcatcatacagaatgggaaaatcatgttt 384

                                                                       
Query: 185 agaaagaaatctttgtatacatatatatttacaataacaattagtgaaaaaagaagataa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agaaagaaatctttgtatacatatatatttacaataacaattagtgaaaaaagaagataa 444

                                                                       
Query: 245 atttgaaggagattaggaaggagtgtaagtgagtatttgaagggaggaaaaaaggaagga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atttgaaggagattaggaaggagtgtaagtgagtatttgaagggaggaaaaaaggaagga 504

                                  
Query: 305 gaaatgttataattatattatgg 327
           |||||||||||||||||||||||
Sbjct: 505 gaaatgttataattatattatgg 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)