BAC Information

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BAC

Clone NameMSMg01-299C21
Chromosome17 (Build37)
Map Location 33,851,852 - 33,852,239
singlet/doubletsinglet
Overlap geneMarch2
Upstream geneLOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm
Downstream geneRab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299C21.T7 (MSMg01no299_c21.b1)MSMg01-299C21.TJ (MSMg01no299_c21.g1)
ACCAG426025AG426026
length745737
length of high quality
(start - end)		471 (72 - 542)59 (232 - 290)
definitionCHROMAT_FILE: MSMg01no299_c21.b1 PHD_FILE: MSMg01no299_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:02 2005CHROMAT_FILE: MSMg01no299_c21.g1 PHD_FILE: MSMg01no299_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCGCGG
AATTCACTGGCGATCTCGAAGATGCGCATGACAGGTCTAGTAACAAATAA
AACATTTCAGAGAGGACCCTATGCCATAAGTGAATTGTGAGTCCTTTTAG
CCAGATTGGCCTAAGAGGGATGTTACCTTTGAAGGGGACACTTCACAGCA
ATTCCTTGAAGTTTGAACTTAGACAGATAGCTTGATCATCTAATATTTTG
TGTGCATTATTTATTTTGGAGAGAGTGTCTCATGTAGCCCAGGCTGTCCT
CAAATTCAATATATAGCTGAGGGTGCCCTTGACCTTGTGATCCTGTTACC
TGATTGCCTGAGTGCTGGGATGACGATGTCATGGGGAGAAGCAACCCAGT
GCTCTGCAAATGCTAGACAACCACTCTACCAACTAAGCCACTACTCCAGC
CTTAGTGTGCAGTGCTTAATACATTTTTGCTGCTATTATTGTTTATTTGA
AACTTATTATAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTTTC
CTTCCTTTTTCCTCCTCTTTTTTCTTCCCTCNCTCCCTTTTTTTTTTTCC
TTTTTCTCTCCCCTTTTTCTCCTTCTTTTCTTTTTCCTCTTTTCCCTCCC
TCCCCTTTTTCTCTTTTTTTCTCTCCCCCCCCTTCCTTTTCTTCTCTCTT
TCCCCCCTTTTTTTTTCCCCCCCCCCTCTTTCTTCTCTCTTCCTG

GGGGTTTCAACCCGCNNGAACNANAGAAGGATAACGNCACCCCGGGGCGG
NACAAAGAGGAAAGCCACGAGAGCCCAGGAAGAAGAACANACCCCACAGN
GNCNCCNNGNGAAGCAAAGGNCAAAAACAGGGCNAGAAGAAANACAGCAG
AAGGGGGGCNAGAAACGGGGCAGAAGCCGAAAGGGCGCCAGACNGNGACA
AGCGGCCACGAAAACACAAGCCATTTGTTGACAGAAAACCTGGCATGTCC
CTGTGAGGGCCAGAAATCAGATACTCTCTAGAGAGAGCTGTTTATGATTG
AGGGCCNCCGAAACGCGCGCGCAGGCACNGCTTGATCTGCTACTCCCACG
CCACCTTCCTATAGCCATTGCTTAGATCAAATCCAAGCCCCTCGGCAGCC
TGGAACTCAAGAGATTTGCTTGGAAAGGCTTTGCTCAAAGAGGATTACAC
GTGAACCCTTGCCACCAATTCCGAGAGGGTGGGGTAGGAGGTAGCCCCCA
CTGCGCCATTTCATCCGCCCTGCCTAAGCCCGTCTTCCCCTCCCTTCCCG
CTATCCCCCCTATCGCTCCTGACCTAATCCCTCCCACCTCCTTTCGTTCA
CCGCCTTCTACTTTCCTGCACCCCCCCCCCCGAACCCGCCTTCTTCTTTT
TTTTTTCCCCCCCCAGACCCCTCCCTGCATCTCCCCCCCTCTTCCTTCCG
CTTCCGCATCTCTCCCTTCCCCCTTCTACTCTTGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_c21.b1 MSMg01no299_c21.b1 CHROMAT_FILE:
MSMg01no299_c21.b1 PHD_FILE: MSMg01no299_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:02 2005
         (471 letters)



>mm_chr17_33851852_33852722
          Length = 871

 Score =  727 bits (376), Expect = 0.0
 Identities = 385/388 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgcgcatgacaggtctagtaacaaataaaacatttcagagaggaccctatgccataagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atgcgcatgacaggtctagtaacaaataaaacatttcagagaggaccctatgccataagt 329

                                                                       
Query: 61  gaattgtgagtccttttagccagattggcctaagagggatgttacctttgaaggggacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gaattgtgagtccttttagccagattggcctaagagggatgttacctttgaaggggacac 269

                                                                       
Query: 121 ttcacagcaattccttgaagtttgaacttagacagatagcttgatcatctaatattttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttcacagcaattccttgaagtttgaacttagacagatagcttgatcatctaatattttgt 209

                                                                       
Query: 181 gtgcattatttattttggagagagtgtctcatgtagcccaggctgtcctcaaattcaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gtgcattatttattttggagagagtgtctcatgtagcccaggctgtcctcaaattcaata 149

                                                                       
Query: 241 tatagctgagggtgcccttgaccttgtgatcctgttacctgattgcctgagtgctgggat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 tatagctgagggtgcccttgaccttgtgatcctgttacctgattgcctgagtgctgggat 89

                                                                       
Query: 301 gacgatgtcatggggagaagcaacccagtgctctgcaaatgctagacaaccactctacca 360
           |||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct: 88  gacgatgtcatggggagaagcaacccagtgctctgcaaatgctagataagcattctacca 29

                                       
Query: 361 actaagccactactccagccttagtgtg 388
           ||||||||||||||||||||||||||||
Sbjct: 28  actaagccactactccagccttagtgtg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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