CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATCTATAACGTCTAGACCCCTACTACTTTTATAATTTTTCAATAAGA
AAATATATACTCACTACACCATAGCTTATAGTTAGAATATGCACCTGCTA
AAGTGATGATGAATTGAATACCAAATTACATGGCAGTCCTGATATGATTA
CGTATATACCTTCCAAGTTAGATCAAATGAAGTTCACACAAGGTCATGTG
GCATAGAAACACTGTATTAGTGCAGCACTCCAAATTTACAATGGGATATT
ACACAGAAATTAAGGAAAGCTCTGATTTTAGTCTTTAAAAATGTGCTTTA
TAAGCCAATGTTCAATATGATAAATAGGAATCATACACTCTTTATAAAGA
CTGAGGTAGAGGTGTGTGTGTAAAATAATTCCAACACATTTTGTAGAGAA
ACATCAATATATCAGTACAAATAATTTAACAGAACATTATATGCACTATA
TAATGTGTACTACATACACTATACAATATATAATGTGTATACATACACTA
TACAATATATAATGTGTACTACATACACTATACAATTTCACTCGGTTATA
GTAATTTTTAAGCAACTATACTATATATAAATATATATTTCATATAAGTG
AAAAACTCATTATAATAGATTATAAAATGTGTTAAAAATTTAAAAATGCT
TAAGTCTTTATTTGTTAAATTATGCACAGCTACAATTT

ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTATGAAATTAGAGGACAGTACCTTGT
AGGCTTAGATTTTTCACAACCTACTTTTAATAAAGGTTCTTCAATACTTC
AAACTTCCTTCTAGCCCACCACACAAAAGAGGTAGTGGAAATGAAAGTTT
AATGTGGCAAAGGAGGATGTGGACCTGTGTGGATATAGTTCTTTGGGGTA
AGTCCAATCTGAATTTTCAGAATACCTGCAGGTCAGTTCACATGAATCAG
CATCAGCAGCTCAATATGCTTGCAAATACCATTCATGAATCAGCAATGTC
AGGTCAATCCAGAAGAAACTGCAAGGCTCTGGTAATCAGCCATGTCCACA
GAAGCAACAAGAAGCTGCTAGAATAACACCAGAAGTTCTTTGGTGTGTTT
CTATGAAGTCATGACAAATGATGGACAGCAAAGAATAGCAAGGTAAACCA
ATACCATACAGTGTTGTCAGTGAAGACCAGCATCAGCAATACCCAATGAT
AACCAGCAAAGAATGGTAAGGCATACCAATACCACACAGCATGTCCACTG
TCTGTTGGGTTGTAGGTTGTACCCTTTCCAAACATCATGTGTTCTCTCAA
GTGTCCGTTCTACAAAAAGTACATGCCCCCTTTCCAGGCTGTTTCCAGAA
NAAAACACTACATGTGTCTTCTCAACAAAACATTCTCCAAC

Query= MSMg01no300_i09.b1 MSMg01no300_i09.b1 CHROMAT_FILE:
MSMg01no300_i09.b1 PHD_FILE: MSMg01no300_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:41 2005
         (692 letters)



>mm_chr17_91274587_91275678
          Length = 1092

 Score = 1201 bits (621), Expect = 0.0
 Identities = 672/689 (97%), Gaps = 2/689 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatctataacgtctagacccctactacttttataatttttcaataagaaaatata 64
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatctaaaatgtctagacccctactacttttataatttttcaataagaaaatata 264

                                                                       
Query: 65  tactcactacaccatagcttatagttagaatatgcacctgctaaagtgatgatgaattga 124
           |||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 265 tactcactacaaaatagcttatagttagaatatgcacctgctaaaatgatgatgaattga 324

                                                                       
Query: 125 ataccaaattacatggcagtcctgatatgattacgtatataccttccaagttagatcaaa 184
           |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 325 ataccaaattacatggtagtcctgatatgattacatatataccttccaagttagatcaaa 384

                                                                       
Query: 185 tgaagttcacacaaggtcatgtggcatagaaacactgtattagtgcagcactccaaattt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 385 tgaagttcacacaaggtcatgtggcatagaaacactgtattagtgcagcactccaaaatt 444

                                                                       
Query: 245 acaatgggatattacacagaaattaaggaa-agctctgattttagtctttaaaaatgtgc 303
           ||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||
Sbjct: 445 acaatgggatattacacagaaatgaag-aatagctctgattttagtctttaaaaatgtgc 503

                                                                       
Query: 304 tttataagccaatgttcaatatgataaataggaatcatacactctttataaagactgagg 363
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tttataagtcaatgttcaatatgataaataggaatcatacactctttataaagactgagg 563

                                                                       
Query: 364 tagaggtgtgtgtgtaaaataattccaacacattttgtagagaaacatcaatatatcagt 423
           ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||
Sbjct: 564 tagaggtgtgtgtgtaaaataattccaatgtattttgtagagaaacatcaatatatcagt 623

                                                                       
Query: 424 acaaataatttaacagaacattatatgcactatataatgtgtactacatacactatacaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 acaaataatttaacagaacattatatgcactatataatgtgtactacatacactatacaa 683

                                                                       
Query: 484 tatataatgtgtatacatacactatacaatatataatgtgtactacatacactatacaat 543
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 684 tatataatgtgtacacatacactatacaatatataatgtgtactacatacactatataat 743

                                                                       
Query: 544 ttcactcggttatagtaatttttaagcaactatactatatataaatatatatttcatata 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttcactcggttatagtaatttttaagcaactatactatatataaatatatatttcatata 803

                                                                       
Query: 604 agtgaaaaactcattataatagattataaaatgtgttaaaaatttaaaaatgcttaagtc 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 agtgaaaaactcattataatagattataaaatgtgttaaaaatttaaaaatgcttaagtc 863

                                        
Query: 664 tttatttgttaaattatgcacagctacaa 692
           |||||||||||||||||||||||||||||
Sbjct: 864 tttatttgttaaattatgcacagctacaa 892


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space:   737924
Effective search space used:   737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)