Query= MSMg01no304_l02.b1 MSMg01no304_l02.b1 CHROMAT_FILE:
MSMg01no304_l02.b1 PHD_FILE: MSMg01no304_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:40 2005
(758 letters)
>mm_chr17_30714740_30715897
Length = 1158
Score = 1297 bits (671), Expect = 0.0
Identities = 683/687 (99%)
Strand = Plus / Minus
Query: 72 gtgatccgggagtacatggtatgaatgggtacagttccaggattgtagtattgggaactt 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1158 gtgatccgggagtacatggtatgaatgggtacagttccaggattgtagtattgggaactt 1099
Query: 132 ggctctcttactaattttgtgatcttgagtaattatgtaagctttctgtgatgtagcttt 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1098 ggctctcttactaattttgtgatcttgagtaattatgtaagctttctgtgatgtagcttt 1039
Query: 192 tttatttatatgcattataattagtacttataatgtaatacgtacctgaaaggccattac 251
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1038 tttatttatatgcattataattagtacttataatgtaatatgtacctgaaaggccattac 979
Query: 252 aagacctatatgagctagtaatgcctacaccatattgaaacacaggcagcacaggtatag 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978 aagacctatatgagctagtaatgcctacaccatattgaaacacaggcagcacaggtatag 919
Query: 312 gaaccgtgtacctggcatgtggtaatcagcattactgagtaaatgatgtaatgcatggat 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 gaaccgtgtacctggcatgtggtaatcagcattactgagtaaatgatgtaatgcatggat 859
Query: 372 agtatattatcagtatggagaaagagcatttacatcaattcagtacttctaagttcctag 431
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 agtatattaacagtatggagaaagagcatttacatcaattcagtacttctaagttcctag 799
Query: 432 gaaggtactgcctgtcctggctctaaaccttggtctattagctgttttacccttatactg 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gaaggtactgcctgtcctggctctaaaccttggtctattagctgttttacccttatactg 739
Query: 492 agtgatagtcataattgtctggacagagctcagcacattttatattagttctcaagtgtt 551
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 738 agtgatagtcataattgtctggacagagctcggcacattttatattagttctcaagtgtt 679
Query: 552 tggtgaaattagttggatttgttaatggttgctgttatcagcagctgaatctaacctaga 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tggtgaaattagttggatttgttaatggttgctgttatcagcagctgaatctaacctaga 619
Query: 612 agtggaggttaggtttttggttttttcttctttgattgatctcatccatgcctaggctta 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 agtggaggttaggtttttggttttttcttctttgattgatctcatccatgcctaggctta 559
Query: 672 atgtccttcaaacctcagcttctctcatcagtcacggacctgggtaatttgatattttcc 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 atgtccttcaaacctcagcttctctcatcagtcacggacctgggtaatttgatattttcc 499
Query: 732 tctaaacctggaggacccctccgtcag 758
|||||||||||||||||||||| ||||
Sbjct: 498 tctaaacctggaggacccctccatcag 472
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 758
Length of database: 1158
Length adjustment: 10
Effective length of query: 748
Effective length of database: 1148
Effective search space: 858704
Effective search space used: 858704
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no304_l02.g1 MSMg01no304_l02.g1 CHROMAT_FILE:
MSMg01no304_l02.g1 PHD_FILE: MSMg01no304_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:40 2005
(610 letters)
>mm_chr17_30531793_30532802
Length = 1010
Score = 1060 bits (548), Expect = 0.0
Identities = 597/614 (97%), Gaps = 4/614 (0%)
Strand = Plus / Plus
Query: 1 aaatcaggctgccctgagctcacaatccttctatctaaacgctc-acacacacacacaca 59
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 200 aaatcaggctgccctgagctcacaatccttctagctaaacgctcaacacacacacacaca 259
Query: 60 cacacacacacacacacacacacactacatgctaggcttagctcagtctcagctgggctg 119
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 260 tacacacacacacacacacacactctacatgctaggcttagctcagtctcagctgggctg 319
Query: 120 cttttgaatttaattaagaaaaagctttttggtggtcattgggactgactctatgcatgc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cttttgaatttaattaagaaaaagctttttggtggtcattgggactgactctatgcatgc 379
Query: 180 tgagcaggtgctgtcccactgagctacgcctccaaccatatctacaacttttaacaaaca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgagcaggtgctgtcccactgagctacgcctccaaccatatctacaacttttaacaaaca 439
Query: 240 aagtcagcatttctagtctatgatgagttcctgaatataaaggactaaagcctgtgacac 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aagtcagcatttctagtctatgatgagttcctgaatataaaggactaaagcctgtgacac 499
Query: 300 tgaagaggaaaacagtcccctgaggactgtagtcagctctgaggaaaaggaactgccttg 359
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 500 tgaagaggaaaacagtcccctgaggactgtagtcagctctgaggcaaaggaactgccttg 559
Query: 360 caagcatgaacacttgggttccatcccacagcctacatttagaaaagacaggcgtggtgg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 caagcatgaacacttgggttccatcccacagcctacatttagaaaagacaggcgtggtgg 619
Query: 420 tgagtatgtgtaatcctagtcctggggaggagcggcctggccctgaactacaggccagca 479
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 620 tgagtatgtgtaatcctagtcctggggaggagcggcctggccctgaactgcaggccagca 679
Query: 480 agctcaggcagtggaggagctcgncnttttttttttttttt-tttt-tttt-tttcctgg 536
||||||||||||||||||||||| | ||||||||||||||| |||| |||| ||| || |
Sbjct: 680 agctcaggcagtggaggagctcgtcttttttttttttttttcttttcttttcttttcttg 739
Query: 537 tttccaggtttattgaaaatatggcataacagattaaacagctccacggggggttttgaa 596
||| |||||||||||||||||||||||||||||||||||||||||||| || ||| ||||
Sbjct: 740 ttttcaggtttattgaaaatatggcataacagattaaacagctccacgtggtgttgtgaa 799
Query: 597 attcatgccaactg 610
||||||||||||||
Sbjct: 800 attcatgccaactg 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space: 600000
Effective search space used: 600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
