BAC Information

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BAC

Clone NameMSMg01-305J20
Chromosome17 (Build37)
Map Location 88,957,947 - 88,958,646
singlet/doubletsinglet
Overlap geneCcdc128
Upstream geneLOC100043727, Tacstd1, Msh2, Kcnk12, LOC626888, LOC668863, EG626920, Msh6, Fbxo11, EG225058, Foxn2
Downstream geneLOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr, LOC100043904
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305J20.T7 (MSMg01no305_j20.b1)MSMg01-305J20.TJ (MSMg01no305_j20.g1)
ACCAG430524AG430525
length1,3081,258
length of high quality
(start - end)
---700 (125 - 824)
definitionCHROMAT_FILE: MSMg01no305_j20.b1 PHD_FILE: MSMg01no305_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:46 2005CHROMAT_FILE: MSMg01no305_j20.g1 PHD_FILE: MSMg01no305_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCATTTNNNNNNGACATTGGGCCTAAGACTCCTATGGGAGAGGATCCG
CGGAATTCCATCAATGAGATAATTCTTTAAGAGATGTAAAGCTAAGACCA
TGATGGCTTTGCCTCTTTAAGATTTGATTCTTGAGCTTTATGAGCCCACT
AAGGATTCTTGAATTTCTTTTAATACTCTCAATCACTCCCACCGTTTCTG
TTTCCCTCAAGCCAATGTTTGGCTTGCAATTATTCTGACATCTTTGAGGA
AAATGACCTCAATGACTGGAATTACAATTATGACTCTCTGTTCACCCAAG
ACACTCCAATGTACTCCACAACCAGATGCTTTCAATCCCTGCGAAAATAT
TATGGGCTATGCCTTCCTTAGGATGTTGATTTGACTAAGTAATATACTAC
CCGTCTTTTTCTTCTAGACCGCCCTCTTTGGTCTCCTGACCTATCGTTAT
AAACTGATTTTTTTCCGCTCCCTCCTGGGTAATCTCTCCTTTGCAAATAA
AGCATGGGAATCTACCTGCTGGTCATTGCCTCAATAGACTCCCAAACAAG
ATGCCAGAACTATAGCCACTCCATATACTGCCACACATATAGTGGTTGCA
GTGCACCTGACTTCTTTACTGTGCTCGCCAATGAAATTACTGTCTATACC
ATTACAGTCATCACTCTGGAAAGGTGGCCCATCATCACCTATGCTGTTCA
GCTGGACCAGAAGATGACGATGACACATGGCTTCCCAATTATGCTCGGAG
CATGCATTTTTTCTACCCTGACGGCCACATTGTACCTTGTGAGAGCTAAT
CGATAATTGACTGTCAGCATCTGCCTCGCCATGGGAGTCCAATCCACTCT
GTCACAAATCGACATATTATCCATCTTGCTCCTCACTGCACGATCTTTGC
TGGCATCAGTGCTTGCTACTTGATCAAATCTTTCCGGTTAAAATCCAGAA
ATGACCTGTTCTAACAGGGATTCTGTCCTTTTTACAAGGATGAAATTTTT
TGTATTACAAAATTCCATGGAAGCCGCCCATCTCATTCTTTGCACTTCAA
GGTCTTCCAGTTCCCCTTTTCCTGGAACGACCTAATAGTCTTGTTGGGCT
TTTTTAACTCCAATCTTTTGGCGAACCTTTTTTAAAAAAAGGGGAAAAGG
GTTTCTCAAAAAAAAATTACCCTATACCAAAATTTTGGGTTCCGCCCACT
CTCAATTTTAAAAAAGGAGATTGTGTGTTCTTCTTATCTTAAAATTTAGG
ATACCTGGTTTACTTTCTTACAATATTAGATAGGTTCTCACCCATCATAA
CAAATATA
CCGCCTCTTTNNNNTCCCATGGATGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTAAAGATGCTTCTCTCTCAT
TTTCAGTTCTCCCAATACCTTCATGAAAACGCATCGTATGTCCGCCCCCT
TGAGGAAGGAATGCTGCACTTATTCGAGAGCATTACAGAGGCTACTGTGA
CTGTCCTGGTAATTCCCTCCTTGTTTTACAGCAGAAAATGGGAGCTCTTA
TTGGCCGGTAACGCTTTTAACTGTGAAATTACTTTTTTATCCAGGAGACA
ACTGTGAAATTGAAAACGTTTTCAGATCATCTAACTTCCTACGTACGCTT
CCTGAGGAAGATCCTTCCTTATCAGTTAAAAAGGTATGCATTCCCCTAGA
GGCCGGGAGTTGATGAAGCTGCAGATGGGACCTGGCTTGCCCTGGAGTTA
ATAGTCCGAGTGGTCAGTCAGTCAGTCAGCTGTGGTTCTCAACTGCCCTC
TACTCTGCTGACTGTTAGCATTGCACAAGGCCATAAGCAGTGGTTTTTAT
AATTGAGAAGGCCACATTTTTTTGGAAGAAAAATTTTGGCTTTGAGTTCA
TATTATTCCTTTGTTGTTAATATCTTCGTGGGAGTTAGAATATTTAACAT
CTGCATTTGAATCTTAATCCTTAGGTATTTTTGAAATGATATCTTTTAAT
TGTTATTATTGTTACCTTATTTAAATTATAAAGTAAAATATTTATCTACA
CTGAACCTAGGTCCTTTAATATTTTACCCTAAATATTCAGTAACCTTTAC
TACACATGTTAAATTTCTAGAAATTACAATGTAGACTAGCCTAACCATGA
ATTTATAGAGACCCACCTGCCTCAGCTTTCTGAATGGGAGCATTAAAGGG
GAAAAAGGGCCATCTGGCAAGTTTTATACTTTGATATTTTATCGAAAAAC
ACCAAGTTATCTTTATTGGTTTTTTTTTTTTAAGAAAAATAACATGGGAG
CAAAAATTTTCTTGTGTTAATAAAGATTTCCAAATTAAAAACTCCCCAAT
TTGCTTTTGATATTTTAAAAAAAAAATCCCTTTTTTAAAAAAAAAAATTT
TTTTGGGTCTTTTTTTGAATTCAAACTTTCCCCCATTGGGAAAACAAGAA
CAAAGTTTTTGTTTTAAAAAATATAAAACTTTTTACAGGGCTAAAGAAAA
GGTCCCCGAAAAAACTTGGTGCTTTCCAAACCGGATTTTTTATTCCCCAA
GGGTTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_j20.g1 MSMg01no305_j20.g1 CHROMAT_FILE:
MSMg01no305_j20.g1 PHD_FILE: MSMg01no305_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:46 2005
         (700 letters)



>mm_chr17_88957747_88958846
          Length = 1100

 Score = 1284 bits (664), Expect = 0.0
 Identities = 691/700 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaaacgcatcgtatgtccgcccccttgaggaaggaatgctgcacttattcgagagcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaaacgcatcgtatgtccgcccccttgaggaaggaatgctgcacttattcgagagcatt 260

                                                                       
Query: 61  acagaggctactgtgactgtcctggtaattccctccttgttttacagcagaaaatgggag 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagaggatactgtgactgtcctggtaattccctccttgttttacagcagaaaatgggag 320

                                                                       
Query: 121 ctcttattggccggtaacgcttttaactgtgaaattacttttttatccaggagacaactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcttattggccggtaacgcttttaactgtgaaattacttttttatccaggagacaactg 380

                                                                       
Query: 181 tgaaattgaaaacgttttcagatcatctaacttcctacgtacgcttcctgaggaagatcc 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaaattgaaaatgttttcagatcatctaacttcctacgtacgcttcctgaggaagatcc 440

                                                                       
Query: 241 ttccttatcagttaaaaaggtatgcattcccctagaggccgggagttgatgaagctgcag 300
           ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 441 ttccttatcagttaaaaaggtatgcattcccctagaggccgggagctgaggaagctgcag 500

                                                                       
Query: 301 atgggacctggcttgccctggagttaatagtccgagtggtcagtcagtcagtcagctgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgggacctggcttgccctggagttaatagtccgagtggtcagtcagtcagtcagctgtg 560

                                                                       
Query: 361 gttctcaactgccctctactctgctgactgttagcattgcacaaggccataagcagtggt 420
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttctcagctgccctctactctgctgactgttagcattgcacaaggccataagcagtggt 620

                                                                       
Query: 421 ttttataattgagaaggccacatttttttggaagaaaaattttggctttgagttcatatt 480
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcaataattgagaaggccacatttttttggaagaaaaattttggctttgagttcatatt 680

                                                                       
Query: 481 attcctttgttgttaatatcttcgtgggagttagaatatttaacatctgcatttgaatct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attcctttgttgttaatatcttcgtgggagttagaatatttaacatctgcatttgaatct 740

                                                                       
Query: 541 taatccttaggtatttttgaaatgatatcttttaattgttattattgttaccttatttaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taatccttaggtatttttgaaatgatatcttttaattgttattattgttaccttatttaa 800

                                                                       
Query: 601 attataaagtaaaatatttatctacactgaacctaggtcctttaatattttaccctaaat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 801 attataaagtaaaatatttatctacactgaacctaggtcctttaatattctaccctaaat 860

                                                   
Query: 661 attcagtaacctttactacacatgttaaatttctagaaat 700
           ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 861 attcagtaacctttactacacatgttacatttctagaaat 900


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space:   752100
Effective search space used:   752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)