BAC Information

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BAC

Clone NameMSMg01-305K06
Chromosome17 (Build37)
Map Location 89,701,150 - 89,701,556
singlet/doubletsinglet
Overlap genenone
Upstream geneFoxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr
Downstream geneLOC100043904, LOC100043906, Nrxn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305K06.T7 (MSMg01no305_k06.b1)MSMg01-305K06.TJ (MSMg01no305_k06.g1)
ACCAG430542AG430543
length1,3241,220
length of high quality
(start - end)
422 (31 - 452)---
definitionCHROMAT_FILE: MSMg01no305_k06.b1 PHD_FILE: MSMg01no305_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:49 2005CHROMAT_FILE: MSMg01no305_k06.g1 PHD_FILE: MSMg01no305_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCGGGCACTGGGCCTATAGACTCACTAAGGGAGAGGATCCGCGGAATT
CTCTTCCTTCCATCCAGAGCTATTTGATAGCTGGGGACAATGAATTCACC
TTTAATCCGAGGTTTCTGGAATAAAACTCCAATCAGCCGAGTTTCCTTTT
ATGGTAGAGAAGCTCTCCTCAACATCCTGACTGGTGCTTGTTTTGTTTGT
GCCTGGAGATTGCTCTCTGAGGAGAGCAATTTATATAGAAGCAGAATAAA
GACAAGACAATAAAAGAAGAGACAAAAGCAGAAAGGATGGAAGAATACTC
GCCCAGGGCCAAATGACTATGTTACAGGATTTCCAACAGATTTTACCCTG
CTTCCTTTTGGACCACCTTAGCCCTATTCTCTGAAGAAGGGACAATGTCT
TTTTTTTCTGTCTTTTGTAAGTAGGAGTGAGAGAGGTATCTGTGTGAATT
TATTTTTTTTCCCCCCCCCGCTTTCTGACAAGGTCTTCATAAAAAAAGGG
GGTCCTCCCCAATTTTTAAGTGCACTGTCCATTTGGCCAATTTGTTTCCG
TGCTCACCAGTGATGAAGACAGGTTGTCTAAGTGGTTCCTAGAAGAGGCA
ATAGTAACAAAGCAAGCCCTGACATGAGCTATAAGAAGGAAAAGGGCTCT
GGGAGTGCCTGACTCCATCAGTTTACTCACCAGCTAGCATTTTAGGTTTA
CAAAAAGACAATAAAAGAACACTAGGCATGTTTTTTTTTTAATTTCTGAA
AATAAGTGGTAGAAGAGAGGTGACAGTGTATTGATCCTTTTCTTCTGATA
TTATGATGGAAGTGCAGCTAACTTTANAAAAAAAGGGGGAGATTCTTTAA
GGAAACTGTGGCTTATTCAGTGATCTCTGATTCCCCCAGTGGTTGGCATT
CATTCTCCCCTGCTAGAGAAGGAAACTCTGGCTCCCAAAATAAAGATCTA
GAGATTCTGTCCTTTTTTGACAGGATGGGGTTAGTTAACACACCAAAGTG
GGGGTTGTTGGAAAATACAACCAATTGGTATTTGGGATATGAAATTTGTA
ACCCCAAGGAATATTTTTTGAACCCTCATATACTTCCCCTAAAGAAATGT
TGACAAAAATTTGGTGGAAACAAATATAAGGTGGTCCCCAATAACAGGGT
TAATAACACAAAAATTCTCCCTCTTCCCTCTATAATCGCTACTCTTCTAT
ACATGGTGTGGAAGCATTGTAATACATAAACATACACATATGTATCTCTT
CATATTTCTGTGCTATCCTCTGGANNTTNCGTTNTGTTNNNANANTATTA
NACTGCGATCCTTCTTATTGATAG
AAATTTTTAACTATGTATAGCTGGTGGCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCCTTTAAAGGNNNNNNNNGNNGNNNNNNN
GGAGAAGGNNGNCCTTAAAAAAGGGNNNNNGNNNNNGAAGAGAAAANNNN
NNNNGAAANAAAGGAANNNNGNGGGNNNNNNANANNNCCCANAGGAGAAA
GAAGGGNANNNANNNNNGNANNNGANAAAAGGGGAAAAAGNAAGNANGGG
ANNAAANNGGGGGANAGGGNAAAGGGAANGGAANNNGNNGGNNNNNAAAA
AAAAAAANGGGNNGANNGNNNNAANANNAANNGAGTTTGNNGAGNNNNNA
GANGNAAGNGNNGGNGAGGGGAGGAAAGGAGGGGGGGGNNGGNGGAGGGG
AAGAGAGGTGTGTTNGNNAAANGGNGGNAGNAAGNGGAAAGGGGGGGAAA
AAAAAAAAAAGTTTGTGTTTCCGCCNNCCCCAAAAAANNNNCCCCCCCAA
AAGGAGAAGAAGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_k06.b1 MSMg01no305_k06.b1 CHROMAT_FILE:
MSMg01no305_k06.b1 PHD_FILE: MSMg01no305_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:49 2005
         (422 letters)



>mm_chr17_89700935_89701756
          Length = 822

 Score =  741 bits (383), Expect = 0.0
 Identities = 401/407 (98%)
 Strand = Plus / Plus

                                                                       
Query: 16  gaattctcttccttccatccagagctatttgatagctggggacaatgaattcacctttaa 75
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaatactcttccttccatccagagctatttgatagctggggacaatgaattcacctttaa 275

                                                                       
Query: 76  tccgaggtttctggaataaaactccaatcagccgagtttccttttatggtagagaagctc 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tccgaggtttctggaataaaactccaatcagccgagtttccttttatggtagagaagctc 335

                                                                       
Query: 136 tcctcaacatcctgactggtgcttgttttgtttgtgcctggagattgctctctgaggaga 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tcctcaacatcctgactggtgcttgttttgtttgtgcctggagattgctctctgaggaga 395

                                                                       
Query: 196 gcaatttatatagaagcagaataaagacaagacaataaaagaagagacaaaagcagaaag 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gcaatttatatagaagcagaataaagacaagacaataaaagaagagacaaaagcagaaag 455

                                                                       
Query: 256 gatggaagaatactcgcccagggccaaatgactatgttacaggatttccaacagatttta 315
           |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gatggaagaagactctcccagggccaaatgactatgttacaggatttccaacagatttta 515

                                                                       
Query: 316 ccctgcttccttttggaccaccttagccctattctctgaagaagggacaatgtctttttt 375
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |
Sbjct: 516 ccctgcttccttttggaccaccttagccctattctctgaagaagggacaatgtccttgct 575

                                                          
Query: 376 ttctgtcttttgtaagtaggagtgagagaggtatctgtgtgaattta 422
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ttctgtcttttgtaagtaggagtgagagaggtatctgtgtgaattta 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)