Query= MSMg01no305_l23.b1 MSMg01no305_l23.b1 CHROMAT_FILE:
MSMg01no305_l23.b1 PHD_FILE: MSMg01no305_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:04 2005
(416 letters)
>mm_chr17_50189171_50189986
Length = 816
Score = 719 bits (372), Expect = 0.0
Identities = 396/404 (98%)
Strand = Plus / Plus
Query: 11 ggaattctgcctgcctgcctcaacttcctccaccaatttctgttgatgttttaagtacct 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 ggaattctgcctgcctgcctcaacttcctccaccaatttctgttgatgttttaagtacct 270
Query: 71 ggattaatgacattttgttgtctgtctgtctgtctctgtacctacttacttacctatcat 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ggattaatgacattttgttgtctgtctgtctgtctctgtacctacttacttacctatcat 330
Query: 131 ctatttgctgtttattcttgctgcacacttaataaactcacccactcaaaccaaaatcat 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ctatttgctgtttattcttgctgcacacttaataaactcacccactcaaaccaaaatcat 390
Query: 191 ggctatcatataataatctgcagtgtctacagaacaagagatgatgctgggaagacagag 250
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ggctatcatagaataatctgcagtgtctacagaacaagagatgatgctgggaagacagag 450
Query: 251 cgagcagggatagaaatgaggagatgcaatgctagtgagcagttacgacagggcagctgt 310
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 451 cgagcagggatagaaatgaggagatgcaatgttagtgagcagttaccacagggcagctgt 510
Query: 311 gcctcatcagggacacaggtccactgggacaatgtctcctcagttgcatccactatttac 370
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||
Sbjct: 511 gcctcatcagggacacaggtccactgggacaatgtcaccttagttgcatccactaaggac 570
Query: 371 gagacaactgaggtacccatccacttggaccgaaagtcacttct 414
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gagacaactgaggtacccatccacttggaccgaaagtcacttct 614
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space: 328449
Effective search space used: 328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no305_l23.g1 MSMg01no305_l23.g1 CHROMAT_FILE:
MSMg01no305_l23.g1 PHD_FILE: MSMg01no305_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:04 2005
(293 letters)
>mm_chr17_50260910_50261601
Length = 692
Score = 449 bits (232), Expect = e-130
Identities = 280/296 (94%), Gaps = 6/296 (2%)
Strand = Plus / Minus
Query: 1 ctacagatgccccctgtgtctgccttttacataggttctggggattcaaactcagatctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ctacagatgccccctgtgtctgccttttacataggttctggggattcaaactcagatctt 535
Query: 61 cacactc-ggggtaatggcaccacccactgaa-ccatc-tcccaggcactcacttcctgg 117
||||||| ||||||||||||| | ||||| || | ||| |||| |||||||||||||| |
Sbjct: 534 cacactcgggggtaatggcactatccact-aagcaatcttccc-ggcactcacttcctag 477
Query: 118 ttttcttcttgctctctgctggcttcgttgcctagcctgtccctgctcagcagcaaacac 177
||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 476 ttttcttcttgctttctgctggcttccttgcttagcctgtccctgctcagcagcaaacac 417
Query: 178 taaggacatctccaaggttgtgcgtggctcccacgcttgtctgccgttgacgaaggttct 237
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 416 taaggacatct-caaggttgtgcgtggctcccacgcttgtctgccggtgacgaaggttct 358
Query: 238 cagattcttctctccagccagagctcccattggtgctgtaacacagcatcatctct 293
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 cagactctactctccagccagagctcccattggtgctgtaacacagcatcatctct 302
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 692
Length adjustment: 9
Effective length of query: 284
Effective length of database: 683
Effective search space: 193972
Effective search space used: 193972
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
