TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAATACGCGG
AATTCTTTTAACAATTCCAGAACAGTGGTGCTGTAGGCCTGTGGTCCCAG
GTACTTGGATGGCTAAGGAATGAAGACTATAAATTTAAGCCACCCATGAT
TACATTGCAAATGTCTAGCCACCCTGGGCAACTTAGCTAGACCCTGTCAC
AAAGACATGAAGTTATGCTATGCTGATGTTGGAGCTTAAGTGTAGAGCAT
TTGTGCTTCCATGCCAAGGTGTAGGAGTGTTACCCTTCGAGGTCCATTGC
CCACTCTTTGACCGAGTCACAGAAGTCATTTTGAGTCTACCTTTCTGATG
CTACCAGCTCTTTACTCTGGTTTTAGCTCATCTCCGCTCCCAGCCTTTGT
CTCCCTGCTTCCTCCCTATGCCTTTACCTGCCACCTCACAACGCCCTTTG
GGTTCCTGGGAAGAAACTTTTGAGTTAAGCTTCAGAAATTCTGGTTTAAT
GTCATGTTACCATGTTGGATTTTTTTAAAGGCTATAATGTAGTCACCTTT
CCCCCAAGGGTCCTGCATTGGGTAACAGGAGTTACATTCGCTGTACTCTC
TCTTCCCAACTCAGCTGTCAGGTAGTTGTAGAGGGAGCCACTTGCTCTCA
TTTTCTGGACCCAAAGTCTAAGAAAAGCACATGTGTTTTGGGCATGGATT
GACATCCAGATGGCACCTATTATGACTTTCCAGGTTCTTGTACCTCAAAG
AACAGGTCCCA

GGGGGACGCCGGGCCTTCGGACCCGCCGAACNANANAAGGTTTAGCGGGA
GCNGAGGGGAGNGAAACCGAAGGGNAGAGAAGCACCGGAAAAAAGGTTTT
ACACACAAAANCAGCGGGGAAAGGCAAACCAAAACAACCCNAAGAANCCA
CCNCACACCAGNCAGAAGGGCNAAGAACAAAAANNCAGGGGACAGCAGAA
GCCGGCGAGGAGGNGGAGAAAGAGGAACACCCTTTTTTTGTTGGNGGGAG
CGCAGGCTTGGACAACCACTCTGGAAATCCGTCTGGCGGNTCCNCAGATT
ATGGTACTTTTNACNACCGGAGGACCCAGCAANACCNCNCCTGTTTTTTT
CTCCCCCCCACCCCCCAACTGGNAAGAAGGACACATGCTCCACTATGTTC
ATAGCAGCATTATATATAATAGCCAGAAGGTGGAAAGAACCCAGATGCCC
CTCAACAGAGGAATGGATACAGAAAATATGGCACATCTACCCAATGGAGT
ACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGG
ATGGACCTGGAGGGCATCATCCTGAGTGAGGGAACACATTCACAAAGGAA
TTCACACAAAATGTACTCACTGAGAAGGGGAAATTATTTTTTTTTTTTTT
TTATACCCCAGATATAAGATACAATTTCCCATAACACATGACACCCCTGA
AAAATGAAAGACTGAAGCGCGGCACCCTATTGCCCCT

Query= MSMg01no306_k19.b1 MSMg01no306_k19.b1 CHROMAT_FILE:
MSMg01no306_k19.b1 PHD_FILE: MSMg01no306_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:32 2005
         (607 letters)



>mm_chr17_3431459_3432456
          Length = 998

 Score = 1021 bits (528), Expect = 0.0
 Identities = 584/608 (96%), Gaps = 11/608 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tataaatttaagccacccatgattacattgcaaatgtctagccaccctgggcaacttagc 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tataaatttaagccagccatgattacattgcaaatgtctagccaccctgggcaacttagc 260

                                                                       
Query: 61  tagaccctgtcacaaagacatgaagttatgctatgctgatgttggagcttaagtgtagag 120
           ||||||||||||||||||||||||||     |||||||||||||||||||| ||||||||
Sbjct: 261 tagaccctgtcacaaagacatgaagt-----tatgctgatgttggagcttacgtgtagag 315

                                                                       
Query: 121 catttgtgcttccatgccaaggtgtaggagtgttacccttcgaggtccattgcccactct 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 316 catttgtgcttccatgccaaggtgtaggagtgttacccttcgaggcccattgcccactct 375

                                                                       
Query: 181 ttgaccgagtcacagaagtcattttgagtctacctttctgatgctaccagctctttactc 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ttgcccgagtcacagaagtcattttgagtctacctttctgatgctaccagctctttactc 435

                                                                       
Query: 241 tggttttagctcatctccgctcccagcctttgtctccctgcttcctccctatgcctttac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tggttttagctcatctccgctcccagcctttgtctccctgcttcctccctatgcctttac 495

                                                                       
Query: 301 ctgccacctcacaacgccctttgggttcctgggaagaaacttttgagttaagcttcagaa 360
           |  |||||||||||||||||||||||||||||||||||||||||     |||||||||||
Sbjct: 496 cccccacctcacaacgccctttgggttcctgggaagaaactttt-----aagcttcagaa 550

                                                                       
Query: 361 attctggtttaatgtcatgttaccatgttggattttttta-aaggctataatgtagtcac 419
           || ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 551 atactggtttaatgtcatgttaccatgttggatttttttttaaggctataatgtagtcac 610

                                                                       
Query: 420 ctttcccccaagggtcctgcattgggtaacaggagttacattcgctgtactctctcttcc 479
           |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 611 ctttcccccaagggccctgcattgggtaacaggagttacattcgctgtgctctctcttcc 670

                                                                       
Query: 480 caactcagctgtcaggtagttgtagagggagccacttgctctcattttctggacccaaag 539
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 caactcaactgtcaggtagttgtagagggagccacttgctctcattttctggacccaaag 730

                                                                       
Query: 540 tctaagaaaagcacatgtgttttgggcatggattgacatccagatggcacctattatgac 599
           |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 731 tctaagaaaagcacgtgtgttttgggcatggattgacatccagatggcacctcttatgac 790

                   
Query: 600 tttccagg 607
           ||||||||
Sbjct: 791 tttccagg 798


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 998
Length adjustment: 10
Effective length of query: 597
Effective length of database: 988
Effective search space:   589836
Effective search space used:   589836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)