Query= MSMg01no306_n13.b1 MSMg01no306_n13.b1 CHROMAT_FILE:
MSMg01no306_n13.b1 PHD_FILE: MSMg01no306_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:44 2005
(291 letters)
>mm_chr17_58643198_58643889
Length = 692
Score = 408 bits (211), Expect = e-118
Identities = 271/295 (91%), Gaps = 11/295 (3%)
Strand = Plus / Minus
Query: 1 aagaataa-gcaaactgaattccatgtctctactcaccaagagaaattc----ttagccc 55
|||||||| |||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 380 aagaataacgcaaactgaattccatgtctctactcaccaagagaaattcaaagtt----c 325
Query: 56 tgaaactttgtataaaacatgaacatctttttatatctacatggcacaaggcttacacac 115
|||||||| |||| |||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 324 tgaaacttcatatacaacatgaacatctttttatatccacatggcacaaggattacacac 265
Query: 116 taatatacttttattattatctgaatattggataggatgtatcaatttttaaaattttct 175
||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 264 aaatatacttttgttattatctgaatattggataggatgtttcaatttttaaaattttct 205
Query: 176 ttattgaagcct-ccccagcctgaagc-ggctggtgcagaccttgtcctcactgaggtgg 233
|||||| ||||| |||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 204 ttattgtagcctcccccagcctgaagcgggcttgtgcagaccttgtcctcactgaggtgg 145
Query: 234 ggccaactgtggtgcagttttccgacttggctggcttcttttgaagtgtcaactg 288
||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 144 ggccacctgcggtgcagctttccgacttggctggcttcttttgaagtgtcaactg 90
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 692
Length adjustment: 9
Effective length of query: 282
Effective length of database: 683
Effective search space: 192606
Effective search space used: 192606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no306_n13.g1 MSMg01no306_n13.g1 CHROMAT_FILE:
MSMg01no306_n13.g1 PHD_FILE: MSMg01no306_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:45 2005
(555 letters)
>mm_chr17_58503284_58504238
Length = 955
Score = 1050 bits (543), Expect = 0.0
Identities = 552/555 (99%)
Strand = Plus / Plus
Query: 1 cagtgaggagcctgccctgtgtgagactgtaagctttttacccatgtgactgccttaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 cagtgaggagcctgccctgtgtgagactgtaagctttttacccatgtgattgccttaggc 260
Query: 61 tttctcaaaacctggcctgtggatttgttttattttcctacagatggaccagcaactctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttctcaaaacctggcctgtggatttgttttattttcctacagatggaccagcaactctt 320
Query: 121 cagctatactttctcactagaagctgagttccagagagcaaggtcgctcgtcctaggcaa 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagctatactttctcactagaatctgagttccagagagcaaggtcgctcgtcctaggcaa 380
Query: 181 agtcacaggtttgtttttgcattctatacttctcactggatgttgttaaactcgataaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 agtcacaggtttgtttttgcattctatacttctcactggatgttgttaaactcaataaaa 440
Query: 241 ttgtctcttctgtttgtgtgttcagtgattcacacaggaagacattgcttctatctgttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgtctcttctgtttgtgtgttcagtgattcacacaggaagacattgcttctatctgttc 500
Query: 301 tcttgatacaggttttgaaatgagatatgctaagaaagaaatgtgctaatggtgcaggat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcttgatacaggttttgaaatgagatatgctaagaaagaaatgtgctaatggtgcaggat 560
Query: 361 gccatccatgtctgttttgttgactggttagttcatttcttgtaattattaagtttgtaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccatccatgtctgttttgttgactggttagttcatttcttgtaattattaagtttgtaa 620
Query: 421 attgttagtaacccaggtagaagtgtgatcaagtaataaggcaagttaacatattttaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attgttagtaacccaggtagaagtgtgatcaagtaataaggcaagttaacatattttaat 680
Query: 481 ttaaattatataattatttttcttttagatagtcaactttttatttgcgttcccttagct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttaaattatataattatttttcttttagatagtcaactttttatttgcgttcccttagct 740
Query: 541 ttaaactaaaggaat 555
|||||||||||||||
Sbjct: 741 ttaaactaaaggaat 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
