BAC Information

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BAC

Clone NameMSMg01-307E18
Chromosome17 (Build37)
Map Location 36,334,465 - 36,334,792
singlet/doubletsinglet
Overlap geneEG667827
Upstream geneTnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127
Downstream geneLOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307E18.T7 (MSMg01no307_e18.b1)MSMg01-307E18.TJ (MSMg01no307_e18.g1)
ACCAG431705AG431706
length746748
length of high quality
(start - end)		250 (422 - 671)317 (423 - 739)
definitionCHROMAT_FILE: MSMg01no307_e18.b1 PHD_FILE: MSMg01no307_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:18 2005CHROMAT_FILE: MSMg01no307_e18.g1 PHD_FILE: MSMg01no307_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGGACTATACCCTTCACAGCCATGTGGCCTGATATCTGCCTTCTTAGC
CAAGCTCTTCCCTTCTGCCCTATCTATATCCCCATTTGACCCCCACCACA
CACTCACTCTGGGCCTGAAATTGCAGCCCTTTGCCTTTCCTGCACAACTA
TTGGGTGTTCAGTTCTAAGATTATTGTCCATGAAGAACATGATGGAAAAC
ATTTTATAAAATACTGAGTCAGGTGAAACTTCATAATAGTGACAATACCA
AAGTTGGGGCTACAACCATGTATCTGGGTACAGAAAACAGAATTTGAAAG
CACACTGCACAAAATCATCCTTCAACACCTATTTCCATATCACCACAAAT
TTCCCATAAACACACCCAAGTGTAAGAAGTTGTTAAATTTATGGTGAAGA
ATTCAAGTGTCCAGAATTACAAGTATCCCTTTGAGGGCTAAAAATGTATC
CCTGTTTTAGCTGAATAGAGAGGGATCAGAGGGCTATTGATTGATTTGCA
TTGTATATTAGAGAGACCAGAAAATATATTCAATAATTATATTCCAAAGG
AGTGCAGGGTGGGTAGTAGGAGGAGAACCAGAAGCTTTGACTGTCATTGG
CAGTAGGGTTCTCTATTTTAGAGAAGTCCTCGATTTAATGAATTTCTTGT
GTGTAGTTTCCTGCCACGTTATTCAGACCTCGTGGACAGGAGTCCA

CGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTATGCCCATACTGGGCTAGACAT
TAGAGAATCATTTTCCTCTGTCTCCCAATCCTGGGATTAATCCTGGGGTG
TGCAGTGGCTTTTCTTACAACTTTCCTCCCACAGCAGCAGGCAGAGCCTC
CTTTCCCACCCACCTTAGACAGTGTCCCTGGATCCCGAGCTCCAGGCTTT
CACACACTGGGACCCCAAAGAAGAAATATACCAGCAGCAGTCTCTGAATA
GGACCAGGCTTAGTCCTGCACATGAAAAAGCCCACAAACAACTGGGCCCC
AGCTTGGCCTGGAGCTGTTCACTTTCAGACACTGAGGGCTTCTTTTTCCT
TGGGACTGAGCCACACCCCGACGGCAGAGTGAGAAGCTGCCCTTGAGACC
TGTGCCCCTCAGTTCCTCCTTCCTATGCTCCAAGTGTCTGAGGAGTGATT
CCATGCACTGGCTCTTCAGGTAGGTCCTGTATCTTTCTGCCTCACCAGCC
TCCACCAACTTTCTCTGGATGATGAGTGCTGCTGTGTTGTGTCCATCGCT
GTCCTTGTTTTCAGATCGTTGTTCAGTGTGATGTAATTGTGGCAATCCTA
GGCAAACTGCTCATACCTGCAAAGGAGGTGCCTGTTCCAATCCACATCAC
AGTCAGACTTAGCTTGGATGGTGTGAGAGCTTGGCTAGGTCCTCAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_e18.g1 MSMg01no307_e18.g1 CHROMAT_FILE:
MSMg01no307_e18.g1 PHD_FILE: MSMg01no307_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:18 2005
         (317 letters)



>mm_chr17_36334276_36334992
          Length = 717

 Score =  561 bits (290), Expect = e-164
 Identities = 314/328 (95%), Gaps = 11/328 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcagagtgagaagctgcccttgagacctgtgcccctcagttcctccttcctatgctcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ggcagagtgagaagctgcccttgagacctgtgcccctcagttcctccttcctatgctcca 249

                                                                       
Query: 61  agtgtctgaggagtgattccatgcactggctcttcaggtaggtcctgtatctttctgcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 agtgtctgaggagtgattccatgcactggctcttcaggtaggtcctgtatctttctgcct 309

                                                                       
Query: 121 caccagcctccaccaactttctctggatgatgagtgctgc---------tg--tgttgtg 169
           ||||||||||||||||||||||||||||||||||| ||||         ||  |||||||
Sbjct: 310 caccagcctccaccaactttctctggatgatgagtactgccatccaggatgagtgttgtg 369

                                                                       
Query: 170 tccatcgctgtccttgttttcagatcgttgttcagtgtgatgtaattgtggcaatcctag 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tccatcgctgtccttgttttcagatcgttgttcagtgtgatgtaattgtggcaatcctag 429

                                                                       
Query: 230 gcaaactgctcatacctgcaaaggaggtgcctgttccaatccacatcacagtcagactta 289
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 430 gcaaactgctcatacctgcaaaggaggtgcctgttccaatccacatcacagccagactta 489

                                       
Query: 290 gcttggatggtgtgagagcttggctagg 317
           ||||||||| ||||||||||||||||||
Sbjct: 490 gcttggatgttgtgagagcttggctagg 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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