BAC Information

Click to search

BAC

Clone NameMSMg01-307P03
Chromosome17 (Build37)
Map Location 71,213,177 - 71,213,408
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043630, LOC623112, LOC623143, Dlgap1, Tgif1
Downstream geneLOC668724, LOC546695, LOC240156, Mylc2b, 2900073G15Rik, Myom1, Lpin2, Emilin2, LOC100043644, Smchd1, LOC100043879, Ndc80, LOC668740, Spdya, LOC623451, Wdr43, 4632412N22Rik, BC027072, Clip4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307P03.T7 (MSMg01no307_p03.b1)MSMg01-307P03.TJ (MSMg01no307_p03.g1)
ACCAG432156AG432157
length766716
length of high quality
(start - end)
189 (128 - 316)232 (84 - 315)
definitionCHROMAT_FILE: MSMg01no307_p03.b1 PHD_FILE: MSMg01no307_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:07 2005CHROMAT_FILE: MSMg01no307_p03.g1 PHD_FILE: MSMg01no307_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACCAAAATTTACCCGATCGGGTATATCTGTGAGGGATTTTTTTTTCTTC
TTAGTGAAATCATTTTTAATCTCAAAACCCATTTTTACCATGGATCTTCT
GAAGTGGTGAGACCTCAGAGATGAGTGGATCCACGTTTAATCTGGGCCAC
ACCTTCTGCTGGCAGCCTATGGAAAGGATGTGGAAGGAGGCAGTGTCTGG
TCCTTGCCTACTTGCCCTCACGCTTACTGGCTAGTCCATTCTTACACTGG
CGTTAGAGCCTGCTTCATCGGGATTTGGGTGTGTACTGAAGACCAGCTGA
AAAATTCAGTTTTTTTTACTGCATCACCCTCCCGCATTCGTGGACCTTCT
GTTGATAGACAGCTACCCCCCCACTGTTTAGGACCACAGCCTATCCGCCT
TTCTAATAAATCCCGTGTGTGTGCGCACATCCCTGCGCATGTGTTCATTC
TACCAGTTCTGCTCCCCTATGGAACTTTGCTAGTGATAACAATGTAATGT
CTTGCCACTGCATAGTTGTTTGAACATCTAGGAAACTTCTCTCCTTCGCA
GGATTCAGGTTCTGTTCCCAACACTCACTTCTCTGTGGTTTCCAGCCCCC
ACCTAAAATTCCAGTTTCAGGGGTCTCTGATGCCCTCTTTCTGAGCTCCG
TGGAATACCTGCACACCCCATGTAACACCCCAACTCAGCAGGGGCATAAA
TCATATTGTTTAAACG
ACACTATAGAAGGTTTCCCGAAATTCAGGAGAAAGTCCATTTCTTTGGGA
TCTATTATCTCCACAGTCGTTTAGTCTCAGAAAAGGACTCGAATGTCTCC
TTGGGATACCCTCACTCCTTCCACAGATTCGAGGGAGCGTCGGTCAAATC
TTTGTTGCCTTTGGACAGCTGGGCTGCAGTTTTCAACATCGCTGCGGTGA
ACATTCACACCCACAGATATCCTCACATGACTTCAAGGACAACTGTGGGA
AAACATTTTGTATATTGCTTTGTCTTAATTAAGAACGTGGTACTGGCGGA
GATGGCTCTGTGGGTTTTTTTCCTGCCCCCCCCCACTCGAGCGCGCTCGT
ACACGTGCTCGTACACCCACCCCCTCACCCATCACAAAAAATTTCTTGAG
CTGCTTGGAATCCACTAAAAGGATGCATAGGAAGGGTGCCTAGGATACGC
TACTGTACAGATAGAGAAGGACGAGTCAGCCAGACCTAGACAGACATTCT
TCTTCGCAAGTACTGTACTTGTCGCTAGTGCAGTTGCTAGGACTCCCTCC
CTTGCTCATCATAATTTGACCTATCCAAAGGTTTTAGAGAGTGCCCGCCC
AGTCTTGATATCTGTCTATTACCGCGGACCCATTCCGTCTGTCAGCTACT
CTTTTGCCGTTTTCCACCCTCATTGTTTTTTAATGATGCCAGCCCACTCT
TTCCCCGCCCCCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_p03.g1 MSMg01no307_p03.g1 CHROMAT_FILE:
MSMg01no307_p03.g1 PHD_FILE: MSMg01no307_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:08 2005
         (232 letters)



>mm_chr17_71212977_71213608
          Length = 632

 Score =  410 bits (212), Expect = e-119
 Identities = 227/232 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggactcgaatgtctccttgggataccctcactccttccacagattcgagggagcgtcgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggactcgaatgtctccttgggataccctcactccttccacagattcgagggagcgtcgg 260

                                                                       
Query: 61  tcaaatctttgttgcctttggacagctgggctgcagttttcaacatcgctgcggtgaaca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 tcaaatctttgttgcctttggacagctgggctgcagttttcaacatcgctgcagtgaaca 320

                                                                       
Query: 121 ttcacacccacagatatcctcacatgacttcaaggacaactgtgggaaaacattttgtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcacacccacagatatcctcacatgacttcaaggacaactgtgggaaaacattttgtat 380

                                                               
Query: 181 attgctttgtcttaattaagaacgtggtactggcggagatggctctgtgggt 232
           |||||||||||  || || |||||||||||||||||||||||||||||||||
Sbjct: 381 attgctttgtcaaaaatatgaacgtggtactggcggagatggctctgtgggt 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)